Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq17433 89.7 4e-13 seq17422 84.2 2e-11 >seq17433 Length=7742996 Score = 89.7 bits (98), Expect = 4e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 33565 CGCATACCAGAGATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGGCACGTGCGG 33623 ||||||||| |||| ||||| |||||||| ||| ||| || | |||| ||||||||||| Sbjct 6651578 CGCATACCACAGATTGGCGATAAGTTTGCCTCGCGTCATGGAC-AGAAAGGCACGTGCGG 6651520 Query 33624 CATGATGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGT 33683 ||| ||| |||| ||| ||| ||||||| ||| ||| ||| || || | | Sbjct 6651519 CATTCAGTATCGCCAGGAGGATATGGCGTTCACATGCGAAGGCCTGGCGCCCGATATCAT 6651460 Query 33684 CATCAACCCGCATGCGTTCCCCTCGCGCATGAC 33716 ||| || || ||||| | || ||||| ||||| Sbjct 6651459 CATTAATCCCCATGCTATTCCATCGCGTATGAC 6651427 >seq17422 Length=266023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 33565 CGCATACCAGAGATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGGCACGTGCGG 33623 ||||||||| |||| ||||| |||||||| ||| ||| || | | |||| ||||||||| Sbjct 32701 CGCATACCACAGATTGGCGATAAGTTTGCCTCGCGTCATGGACAAAAAGG-CACGTGCGG 32759 Query 33624 CATGATGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGT 33683 ||| ||| |||| ||| ||| ||||||| ||| ||| ||| || || | | Sbjct 32760 CATTCAGTATCGCCAGGAGGATATGGCGTTCACATGCGAAGGCCTGGCGCCCGATATCAT 32819 Query 33684 CATCAACCCGCATGCGTTCCCCTCGCGCATGAC 33716 ||| || || ||||| | || ||||| ||||| Sbjct 32820 CATTAATCCCCATGCTATTCCATCGCGTATGAC 32852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356157882548320