Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq17433 89.7 4e-13
seq17422 84.2 2e-11
>seq17433
Length=7742996
Score = 89.7 bits (98), Expect = 4e-13
Identities = 113/153 (74%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 33565 CGCATACCAGAGATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGGCACGTGCGG 33623
||||||||| |||| ||||| |||||||| ||| ||| || | |||| |||||||||||
Sbjct 6651578 CGCATACCACAGATTGGCGATAAGTTTGCCTCGCGTCATGGAC-AGAAAGGCACGTGCGG 6651520
Query 33624 CATGATGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGT 33683
||| ||| |||| ||| ||| ||||||| ||| ||| ||| || || | |
Sbjct 6651519 CATTCAGTATCGCCAGGAGGATATGGCGTTCACATGCGAAGGCCTGGCGCCCGATATCAT 6651460
Query 33684 CATCAACCCGCATGCGTTCCCCTCGCGCATGAC 33716
||| || || ||||| | || ||||| |||||
Sbjct 6651459 CATTAATCCCCATGCTATTCCATCGCGTATGAC 6651427
>seq17422
Length=266023
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/153 (73%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 33565 CGCATACCAGAGATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGGCACGTGCGG 33623
||||||||| |||| ||||| |||||||| ||| ||| || | | |||| |||||||||
Sbjct 32701 CGCATACCACAGATTGGCGATAAGTTTGCCTCGCGTCATGGACAAAAAGG-CACGTGCGG 32759
Query 33624 CATGATGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGT 33683
||| ||| |||| ||| ||| ||||||| ||| ||| ||| || || | |
Sbjct 32760 CATTCAGTATCGCCAGGAGGATATGGCGTTCACATGCGAAGGCCTGGCGCCCGATATCAT 32819
Query 33684 CATCAACCCGCATGCGTTCCCCTCGCGCATGAC 33716
||| || || ||||| | || ||||| |||||
Sbjct 32820 CATTAATCCCCATGCTATTCCATCGCGTATGAC 32852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356157882548320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |