Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq17434 502 4e-137 seq17439 293 3e-74 >seq17434 Length=8399593 Score = 502 bits (556), Expect = 4e-137 Identities = 1239/1864 (66%), Gaps = 34/1864 (2%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||| || |||| | | || || ||||| || ||||| ||||||||||| || ||| Sbjct 1622251 GTGAACTGTATGGCATTTGCAGCCGGCTTCGTGCGAAGATAATACATTCCCGTCTTAAGA 1622310 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 ||| |||| ||| ||||| || || |||||| ||| | || || || | | Sbjct 1622311 CCGGCTTTCCACGAGTAAAAATGGATCGATGTCAGTTTGCCATAGTTGGGCTCAGCCACA 1622370 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || || || | || ||||||||||| ||||| || || | || || |||||||| || Sbjct 1622371 TGTATGTTGAACGACTGACTTTGATCAATGAATGCCCCGCGATCGGCTGCCATTTTGATC 1622430 Query 78898 ATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 78956 | || ||| ||| |||||||| | || ||||| | | | | || || ||| | Sbjct 1622431 GTTGT-TTTCACGGATATTTCCCACACGGTCTTATACAGATCCCTCACATTTTTTGGTAT 1622489 Query 78957 G--TTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 | || | | || || || ||||| | | || || || |||||| || || |||| Sbjct 1622490 GGATTCGATGTTTTGTATTGATCCTCGACTGGCGATTATTTGATTCTTCATATCATCATC 1622549 Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073 ||| || | ||| |||||| | | | | ||| |||| || || || || || || Sbjct 1622550 CCACAAGTCCAGCTCCGTTAAATCACGCAACAAATGATGATTCACCACCTGGAACTCACC 1622609 Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133 |||| || | || ||||| || || |||||| || || | |||||||||||| || Sbjct 1622610 GGACAGCACGCGTCGGGTGTAGATGTTTGAGGTATACGGCTCAAACGATTCATTATTGCC 1622669 Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 || |||||||| || ||||| |||||||| || || || | | | ||| | | ||| Sbjct 1622670 CATTATTTGAGCCGTAGATGCGGTTGGCATGGGCGCAACAAGCAGAGAATTGCGCACACC 1622729 Query 79194 GTATGATC--TGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGG-GACAAC 79250 ||| || |||| || || || | ||| ||||| ||||| | || | | Sbjct 1622730 --ATGCTCCTTGATCGACAGCTTAAGCGAGTTCCAGTCCCAGAGATCGGTTGGTGTC--- 1622784 Query 79251 ATT---CCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTC 79307 || ||| | ||| || |||| ||||| || ||| | ||||| || ||||| Sbjct 1622785 -TTGCCCCACATATCGTACTGTAAGATACCCTTGCTAACTGGACTTCCTGGATAGGTTTC 1622843 Query 79308 ATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGT 79367 ||| ||||||||||||| ||| ||||| || || || || | ||| || |||| ||||| Sbjct 1622844 ATAGGGTCCTTCCTTTTGGGCCAATTCGCAGCTGGCTTCCAGTGCGCCAAAATAGATGGT 1622903 Query 79368 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAG 79427 ||| || || | | ||| | | | || ||| ||| ||| | |||| | | || Sbjct 1622904 TTCAAAGATTTGTTGATTTAAAAGTGCGGCCTCTTCGCTCTCATAAGGATGACGCATTAG 1622963 Query 79428 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 79487 ||| || || || || |||||||| ||||||||||| || |||| ||| | ||| || Sbjct 1622964 AATCAATGCATCCGCGAATCCTTGCACACCAATACCAATGGGTCGATGGCGAAAATTGGA 1623023 Query 79488 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGAC 79547 | | || || |||| ||||| || || || || || |||||||| | |||| || Sbjct 1623024 TTTCTTTGCCTCCGGAAGCGGATAGTAGTTGATGTCAATTATTTTATTCAAATTCTTGGT 1623083 Query 79548 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA----TCGTCCATCTATTACAA 79603 || | |||| || || || ||||| || || | | ||| | | |||| Sbjct 1623084 TACTGTTTTGGTGACTTCTTTCAGTTTCTTGAAGTCGTACGTTTTGTCGGACG-TCACAA 1623142 Query 79604 ACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 79663 |||||||||| || | ||||| | ||| || ||||| | |||| | ||| ||| | Sbjct 1623143 ACATGTTCAATGCAATCGATGCTAAATTGCACACGGCAATTTCATCGGGTGCCGAATACT 1623202 Query 79664 GTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCT 79723 | ||||||||||| || ||||| || || ||||| || | |||||| ||||| |||| Sbjct 1623203 CGACAATTTCAGTGCATAGATTACTGCATTTGATGGTGCCCACATTTTGCTGATTGCTCT 1623262 Query 79724 TTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTA 79783 | ||| || | ||||| | || ||| | || || ||||| || | ||| | ||| | Sbjct 1623263 TGCGGTTGCATGAGTCCTTGAACAGCATGTAAGGTGTGCCAGTCTCCACCTGTGCTTCAA 1623322 Query 79784 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTC--TCTTTC 79841 | || || ||| | | |||| || |||| || | || |||| | |||||| Sbjct 1623323 TGATGGCAAACCAAAGTGTTTGAGCTTTAATTA----CTCGATTCGCTTTGCCCTCTTTC 1623378 Query 79842 --GTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 |||||| || | | || || ||||| ||||||||||| | | || ||||| Sbjct 1623379 TCGTATTGAACGTACAGTTTCTCAAAATCGTCGCCCCAAACATCTTGGAGGCCGGGACAC 1623438 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCA 79959 | | || ||||||| ||||| || ||| | | || ||||||||||| |||||| Sbjct 1623439 TTATGTGGGCACATCAGGGACCAATCCTCATTGGCTTCGACGCGTTTCATAAACAGATCA 1623498 Query 79960 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 80019 || ||||| | || ||| || || | | | ||||||||| || || || || || Sbjct 1623499 GGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGCTCCTCTTTGCCCGTGTTTTTC 1623558 Query 80020 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 80079 || | ||| | || | | ||||| ||||||||||| ||||| || ||||| | | Sbjct 1623559 TTCAAATCCATAAATTCTAATATATCCGAATGCCACGGCTCCAAATAGATGGCAAATGCA 1623618 Query 80080 CCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 80139 |||||||| || || |||||||| | || | || ||||| | || | || | Sbjct 1623619 CCCGGTCGCTTACCGCCACCCTGATCCACATAGCGTGCCACATTATTGAATACACGCAGC 1623678 Query 80140 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 80199 ||||| | | ||||| || || ||||| || || | || || | || |||||||| Sbjct 1623679 ATTGGCACCAGCCCATTCGAAGTGCCATTCGTGCCACAAATCGAGGTGCCTTTGGCACGA 1623738 Query 80200 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 80259 ||| | || || || || || || || ||| ||||| | |||||| ||| Sbjct 1623739 ATACAATGAACGTTCAGCCCGATGCCACCAGCGGCTTTGGAGATCATGGCGCATTGTTCG 1623798 Query 80260 AACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGAC 80319 | | | | |||||||| || ||| | |||| | | || ||||| ||| Sbjct 1623799 ACGGATTTGAAAATGCCCTCAATCGAATCGGAGACCATGGTTAAAAGGAAACACGACGAC 1623858 Query 80320 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 80379 ||||| ||||| | || | || ||| | || || || || ||||| || | || Sbjct 1623859 ATTTGCGGACGATTTGTGGCAGCGGCAAAAAGTGTTGGCGATGCATGCGTGAAGTACCTT 1623918 Query 80380 TCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG--ATGAATTCCTA 80437 |||||||| ||||| || ||||| | ||| | || |||| ||| | ||| || || | Sbjct 1623919 TCAGACAGCAGATTATAGGTCTCCACAGCAGCATCAATAT--CATCGCCATGTATCCCAA 1623976 Query 80438 CCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACA 80497 || ||| ||||| | ||||||||| || | || | || |||| |||||| |||| || Sbjct 1623977 TCGAGACGCGCATCAGCATGTGCTGTGGACGCTCTGCTATTTTGTGATTTATCTTCAGCA 1624036 Query 80498 AGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 80557 | || ||| || | || ||||| |||||||| || || |||||| || ||||| | Sbjct 1624037 AATACGATCGCTCGAGCGTCTTAAATCCAAAATAATTATAGCCAAAGTCACGATCGTAGA 1624096 Query 80558 TAAT 80561 | || Sbjct 1624097 TGAT 1624100 >seq17439 Length=18325388 Score = 293 bits (324), Expect = 3e-74 Identities = 566/828 (68%), Gaps = 13/828 (2%) Strand=Plus/Plus Query 49672 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 49731 || ||||| ||||| || || |||||||| ||||| || |||||||| || ||||| Sbjct 9056302 TGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCC 9056361 Query 49732 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 49791 |||||| ||| ||||| | ||||| ||||| | || | || | ||| Sbjct 9056362 ATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAGCTCCACCAACAAG 9056421 Query 49792 CTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 49851 | ||| || || || || |||||| ||||| |||||||||| || || || || Sbjct 9056422 CGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCAGATTT 9056481 Query 49852 ACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGAT 49911 || || | ||| |||| ||||| || || ||||| | || ||||| | | ||| Sbjct 9056482 ACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAGAC----GAT 9056537 Query 49912 CTAACGGTTTC-TTCAC---TCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967 || | | | | ||||| | || | |||| | || | ||||||| | || || Sbjct 9056538 CTCAATGATGCGTTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATCATAACCGCAAA 9056597 Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027 ||||| ||||| ||||| || | || || ||||| || || || || |||||||| Sbjct 9056598 GTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCAT 9056657 Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTC 50087 ||||||||||||||||||||| || ||||| ||||| || ||||||||| ||||| Sbjct 9056658 TAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTTC 9056717 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG--CTGTCATGTA-TCCACTT 50144 || || || ||||||| || | ||| ||| | |||| || ||| | |||| Sbjct 9056718 GACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAAATCCAAGA 9056777 Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 | ||||| || ||||| |||||| ||||| ||||| || ||||| |||||||| Sbjct 9056778 GAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTGAAGAGATA 9056837 Query 50205 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 50264 | | || | |||| | |||||| ||||| | | ||| ||||| || || || Sbjct 9056838 ATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGAGTG 9056897 Query 50265 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 | || || ||||| |||||||| || ||||| || | ||||| |||||||||||||| Sbjct 9056898 TACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTTC 9056957 Query 50325 TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384 | ||| || ||| | | ||| || || || || || || ||| || || || || Sbjct 9056958 CTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAGC 9057017 Query 50385 CAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCCAATCATTGATAT 50443 ||| |||||| || ||||| || ||| |||| || || ||| || | || | Sbjct 9057018 CAACACATGTGAAATGAAATGACGCTCATTGTCTGTTAAGCGTA-CCCAGTCCGTCATGT 9057076 Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | || |||| ||| || || ||||| ||||| |||||||| || |||| Sbjct 9057077 CCTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGCCT 9057124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718112217401600