Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq17439 147 2e-30 >seq17439 Length=18325388 Score = 147 bits (162), Expect = 2e-30 Identities = 471/731 (64%), Gaps = 0/731 (0%) Strand=Plus/Plus Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631 |||||||| |||||||| | ||| | || ||||| || || |||||||| |||| | Sbjct 9056290 ACGCCCATGCGCTGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAAT 9056349 Query 13632 GATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGT 13691 || || ||||||| ||| ||||||||| ||| || | | |||| | ||| || Sbjct 9056350 GAAATCATTTCCATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAGC 9056409 Query 13692 TCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13751 || | | || | ||| || | ||||||||||||| ||||| | |||||||||| Sbjct 9056410 TCCACCAACAAGCGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATG 9056469 Query 13752 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCT 13811 || || || |||||||| | | || | ||| || | || |||| |||||| || Sbjct 9056470 CCAATCAGATTTACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCC 9056529 Query 13812 TTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAA 13871 | || | || ||| ||| | | || || | || || | | Sbjct 9056530 GAGACGATCTCAATGATGCGTTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATCATA 9056589 Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 |||||| || ||||| || |||||||| | || || |||||||| || || | Sbjct 9056590 ACCGCAAAGTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGA 9056649 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||| | || || ||||| | ||| || || | ||||| ||| |||||| Sbjct 9056650 CCGGGCATTAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAG 9056709 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 || || || || ||||| || || || | || || ||||| || ||| || Sbjct 9056710 ATGCCTTCGACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAA 9056769 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 ||||| ||||| || | || || | | |||||||||||||||||| Sbjct 9056770 ATCCAAGAGAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTG 9056829 Query 14112 AATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 || | ||| || || | || | | || || || || || || | || ||||| Sbjct 9056830 AAGAGATAATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATC 9056889 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 || ||||||| || ||||| || |||||||||||||| ||||| | || || | Sbjct 9056890 TCTGAGTGTACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATC 9056949 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || |||||| | ||| | || ||| ||| || ||||| || ||||| || || Sbjct 9056950 TGCACTTCCTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCG 9057009 Query 14292 AAAAATGCCAA 14302 || || ||||| Sbjct 9057010 AAGAAAGCCAA 9057020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479623419296000