Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq17439 149 6e-31
>seq17439
Length=18325388
Score = 149 bits (164), Expect = 6e-31
Identities = 474/734 (65%), Gaps = 6/734 (1%)
Strand=Plus/Plus
Query 13360 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGT 13419
|||||||| |||||||| | ||| | || |||||||| || |||||||| |||| |
Sbjct 9056290 ACGCCCATGCGCTGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAAT 9056349
Query 13420 GATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 13479
|| || ||||||| ||| |||||||| ||| || | | |||| | ||| ||
Sbjct 9056350 GAAATCATTTCCATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAGC 9056409
Query 13480 TCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13539
|| | || || | ||| || | ||||||||||||| ||||| | ||||||||||
Sbjct 9056410 TCCACCAACAAGCGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATG 9056469
Query 13540 CCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 13599
|| || || |||||||| | | ||| | ||| || | || |||| |||||| ||
Sbjct 9056470 CCAATCAGATTTACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATC- 9056528
Query 13600 TTTATAATAATCTTAATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT 13656
| |||| ||| ||| ||| ||| | | || || | || ||
Sbjct 9056529 --CGAGACGATCTCAATGATGCGTTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATC 9056586
Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716
| | |||||| || ||||| || |||||||| | || || |||||||| || ||
Sbjct 9056587 ATAACCGCAAAGTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTC 9056646
Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776
| || ||||| | || || ||||| | ||| || || | || || ||| ||||
Sbjct 9056647 AGACCGGGCATTAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAG 9056706
Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836
|| || || || || ||||| || || || | || || ||||| || ||| |
Sbjct 9056707 AAGATGCCTTCGACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGAT 9056766
Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896
|| ||||| ||||| || | || || | | ||||||||| || |||
Sbjct 9056767 GAAATCCAAGAGAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCA 9056826
Query 13897 TTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956
||||| | || || || | || | | || || || || || || | || |||
Sbjct 9056827 TTGAAGAGATAATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTAC 9056886
Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016
|| || ||||||| || || || || |||||||||||||| || || | || ||||
Sbjct 9056887 ATCTCTGAGTGTACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTA 9056946
Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076
|| || ||| | ||| | || ||| || || |||||||| ||||| ||
Sbjct 9056947 ATCTGCACTTCCTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCG 9057006
Query 14077 GCAAAAAATGCCAA 14090
|| || || |||||
Sbjct 9057007 GCGAAGAAAGCCAA 9057020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478484467641600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |