Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq17439 149 6e-31 >seq17439 Length=18325388 Score = 149 bits (164), Expect = 6e-31 Identities = 474/734 (65%), Gaps = 6/734 (1%) Strand=Plus/Plus Query 13360 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGT 13419 |||||||| |||||||| | ||| | || |||||||| || |||||||| |||| | Sbjct 9056290 ACGCCCATGCGCTGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAAT 9056349 Query 13420 GATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 13479 || || ||||||| ||| |||||||| ||| || | | |||| | ||| || Sbjct 9056350 GAAATCATTTCCATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAGC 9056409 Query 13480 TCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13539 || | || || | ||| || | ||||||||||||| ||||| | |||||||||| Sbjct 9056410 TCCACCAACAAGCGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATG 9056469 Query 13540 CCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 13599 || || || |||||||| | | ||| | ||| || | || |||| |||||| || Sbjct 9056470 CCAATCAGATTTACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATC- 9056528 Query 13600 TTTATAATAATCTTAATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT 13656 | |||| ||| ||| ||| ||| | | || || | || || Sbjct 9056529 --CGAGACGATCTCAATGATGCGTTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATC 9056586 Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 | | |||||| || ||||| || |||||||| | || || |||||||| || || Sbjct 9056587 ATAACCGCAAAGTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTC 9056646 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 | || ||||| | || || ||||| | ||| || || | || || ||| |||| Sbjct 9056647 AGACCGGGCATTAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAG 9056706 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836 || || || || || ||||| || || || | || || ||||| || ||| | Sbjct 9056707 AAGATGCCTTCGACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGAT 9056766 Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896 || ||||| ||||| || | || || | | ||||||||| || ||| Sbjct 9056767 GAAATCCAAGAGAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCA 9056826 Query 13897 TTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 ||||| | || || || | || | | || || || || || || | || ||| Sbjct 9056827 TTGAAGAGATAATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTAC 9056886 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 || || ||||||| || || || || |||||||||||||| || || | || |||| Sbjct 9056887 ATCTCTGAGTGTACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTA 9056946 Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 || || ||| | ||| | || ||| || || |||||||| ||||| || Sbjct 9056947 ATCTGCACTTCCTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCG 9057006 Query 14077 GCAAAAAATGCCAA 14090 || || || ||||| Sbjct 9057007 GCGAAGAAAGCCAA 9057020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478484467641600