Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq17434 423 3e-113
seq17439 271 1e-67
>seq17434
Length=8399593
Score = 423 bits (468), Expect = 3e-113
Identities = 1224/1878 (65%), Gaps = 31/1878 (2%)
Strand=Plus/Plus
Query 70823 CGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAAT 70882
|||||| ||| || ||||| ||||| || || || |||||| |||| ||||||||
Sbjct 1622274 CGGCTT-CGTGCGAAGATAATACATTCCCGTCTTAAGACCGGCTTTCCACGAGTAAAAAT 1622332
Query 70883 GCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTT 70942
| || || |||||| |||| | || || || | || || || | |||||||||||
Sbjct 1622333 GGATCGATGTCAGTTTGCCATAGTTGGGCTCAGCCACATGTATGTTGAACGACTGACTTT 1622392
Query 70943 GATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCC 71001
|||| ||||| || || | || || |||||||| || | || ||| ||| ||||||
Sbjct 1622393 GATCAATGAATGCCCCGCGATCGGCTGCCATTTTGATCGTTGT-TTTCACGGATATTTCC 1622451
Query 71002 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG--TTTG-TATTCTGAATGGAT 71058
|| | || ||||| | | | | || || ||| | | || | | || || || |||
Sbjct 1622452 CACACGGTCTTATACAGATCCCTCACATTTTTTGGTATGGATTCGATGTTTTGTATTGAT 1622511
Query 71059 CCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 71118
|| | | || || || ||| || || || |||| ||| || | ||| ||||||
Sbjct 1622512 CCTCGACTGGCGATTATTTGATTCTTCATATCATCATCCCACAAGTCCAGCTCCGTTAAA 1622571
Query 71119 ACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 71178
| | | | |||| |||| || || || || || || |||| || | || |||||
Sbjct 1622572 TCACGCAACAAATGATGATTCACCACCTGGAACTCACCGGACAGCACGCGTCGGGTGTAG 1622631
Query 71179 ATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 71238
|| || ||||||||| || | || |||||||| |||| |||||||| || |||||
Sbjct 1622632 ATGTTTGAGGTATACGGCTCAAACGATTCATTATTGCCCATTATTTGAGCCGTAGATGCG 1622691
Query 71239 GTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATG-----TGATCGGATTTTAT 71293
|| ||||| || || || | ||| ||| | | |||||| |||||| |
Sbjct 1622692 GTTGGCATGGGCGCAACAAGCAGAGAATTGCGCACACCATGCTCCTTGATCGAC----AG 1622747
Query 71294 CTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNN 71353
||| || || | ||| | ||| ||||| | ||||
Sbjct 1622748 CTTA-AGCGAGTTCCAGTCCCAGAGATCGGTTGGTGTCTTGCCCCACATATCGTACTGTA 1622806
Query 71354 NNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTA 71413
|| || || ||| | ||||| ||| || || || |||||||| |||| ||| |
Sbjct 1622807 AGATACCCTTGCTAACTGGACTTCCTGGATAGGTTTCATAGGGTCCTTCCTTTTGGGCCA 1622866
Query 71414 GTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGAT 71473
||| || || || || | ||| ||| |||| |||||||| || || | | ||| | |
Sbjct 1622867 ATTCGCAGCTGGCTTCCAGTGCGCCAAAATAGATGGTTTCAAAGATTTGTTGATTTAAAA 1622926
Query 71474 CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTT 71533
| || || ||| ||| | |||| | | ||||| || || || || |||||||
Sbjct 1622927 GTGCGGCCTCTTCGCTCTCATAAGGATGACGCATTAGAATCAATGCATCCGCGAATCCTT 1622986
Query 71534 GAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGAT 71593
| || |||||||| || |||| || | ||| || | | || || |||| ||||
Sbjct 1622987 GCACACCAATACCAATGGGTCGATGGCGAAAATTGGATTTCTTTGCCTCCGGAAGCGGAT 1623046
Query 71594 AATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTA 71653
| || || || || || |||||||| | ||| || || | |||| || || || |
Sbjct 1623047 AGTAGTTGATGTCAATTATTTTATTCAAATTCTTGGTTACTGTTTTGGTGACTTCTTTCA 1623106
Query 71654 GTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCA 71710
|||| || || | | || | ||||||| |||||| |||| ||||| |
Sbjct 1623107 GTTTCTTGAAGTCGTACGTTTTGTCGGACGTCACAAACATGTTCAATGCAATCGATGCTA 1623166
Query 71711 GATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTAC 71770
||| || ||||| | |||| | | | ||| | | |||||||||||| |||||||
Sbjct 1623167 AATTGCACACGGCAATTTCATCGGGTGCCGAATACTCGACAATTTCAGTGCATAGATTAC 1623226
Query 71771 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 71830
| || |||||||| || | |||||| ||||| ||||| ||| || | ||||| | |
Sbjct 1623227 TGCATTTGATGGTGCCCACATTTTGCTGATTGCTCTTGCGGTTGCATGAGTCCTTGAACA 1623286
Query 71831 GAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 71890
| || | || || ||||| || | ||| | ||| || || || ||| | | |||
Sbjct 1623287 GCATGTAAGGTGTGCCAGTCTCCACCTGTGCTTCAATGATGGCAAACCAAAGTGTTTGAG 1623346
Query 71891 CCTTTATTATATTCTTGTATCTCTTTTC--TCTTTC--GTATTGTGTATATAATCGTTCG 71946
| || |||| || | || |||| | |||||| |||||| || | | ||
Sbjct 1623347 CTTTAATTA----CTCGATTCGCTTTGCCCTCTTTCTCGTATTGAACGTACAGTTTCTCA 1623402
Query 71947 AACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCAC 72006
|| ||||| |||||| ||| | | || ||||| | || || ||||||| |||||
Sbjct 1623403 AAATCGTCGCCCCAAACATCTTGGAGGCCGGGACACTTATGTGGGCACATCAGGGACCAA 1623462
Query 72007 TCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 72066
|| ||| | | || ||||||||||| |||||||| ||||| | || ||| ||
Sbjct 1623463 TCCTCATTGGCTTCGACGCGTTTCATAAACAGATCAGGTATCCATAAGGCATAAAACAGC 1623522
Query 72067 TCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 72126
|| | | | ||||||||| || || || || || || | ||| | || | | |||
Sbjct 1623523 TCACGTGCCCGATGCTCCTCTTTGCCCGTGTTTTTCTTCAAATCCATAAATTCTAATATA 1623582
Query 72127 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGA 72186
|| ||||||||||| ||||| || ||||| | | ||||| || || || ||||||
Sbjct 1623583 TCCGAATGCCACGGCTCCAAATAGATGGCAAATGCACCCGGTCGCTTACCGCCACCCTGA 1623642
Query 72187 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCA 72246
|| | || | || ||||| | || | || |||||| | | ||||| || |
Sbjct 1623643 TCCACATAGCGTGCCACATTATTGAATACACGCAGCATTGGCACCAGCCCATTCGAAGTG 1623702
Query 72247 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATT 72306
||||| || || | || || | || ||||||||||| || || || ||
Sbjct 1623703 CCATTCGTGCCACAAATCGAGGTGCCTTTGGCACGAATACAATGAACGTTCAGCCCGATG 1623762
Query 72307 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 72366
|| || || ||| ||||| | |||||| ||| | | | | |||||||| ||
Sbjct 1623763 CCACCAGCGGCTTTGGAGATCATGGCGCATTGTTCGACGGATTTGAAAATGCCCTCAATC 1623822
Query 72367 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 72426
||| | |||| | | || ||||| |||||||| ||||| | || | ||
Sbjct 1623823 GAATCGGAGACCATGGTTAAAAGGAAACACGACGACATTTGCGGACGATTTGTGGCAGCG 1623882
Query 72427 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 72486
||| | || || || || ||||| || | |||||||||| ||||| || |||||
Sbjct 1623883 GCAAAAAGTGTTGGCGATGCATGCGTGAAGTACCTTTCAGACAGCAGATTATAGGTCTCC 1623942
Query 72487 ATAGCTGATTCTATATCCCATTG--ATGTATTCCTACCGCGACACGCATTAACATATGCT 72544
| ||| | || |||| ||| | |||||| || | || ||| ||||| | ||| ||||
Sbjct 1623943 ACAGCAGCATCAATAT--CATCGCCATGTATCCCAATCGAGACGCGCATCAGCATGTGCT 1624000
Query 72545 GAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 72604
| || | || | || |||| |||||| |||| ||| || ||| || | || ||||
Sbjct 1624001 GTGGACGCTCTGCTATTTTGTGATTTATCTTCAGCAAATACGATCGCTCGAGCGTCTTAA 1624060
Query 72605 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCT 72664
| |||||||| || || |||||| || ||||| || || | ||||| | |||
Sbjct 1624061 ATCCAAAATAATTATAGCCAAAGTCACGATCGTAGATGATCGCAGAATTTAAGCGATCGG 1624120
Query 72665 TATATTTGTTAACTATAT 72682
|| ||| ||||| ||||
Sbjct 1624121 CATGTTTCTTAACAATAT 1624138
>seq17439
Length=18325388
Score = 271 bits (300), Expect = 1e-67
Identities = 559/827 (68%), Gaps = 11/827 (1%)
Strand=Plus/Plus
Query 41777 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCC 41836
|| ||||| ||||| || || |||||||| || || || |||||||| || |||||
Sbjct 9056302 TGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCC 9056361
Query 41837 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 41896
|||||| ||| ||||| | ||||| ||||| | || | || | |||
Sbjct 9056362 ATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAGCTCCACCAACAAG 9056421
Query 41897 CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 41956
| ||| || | ||| || |||||| ||||| |||||||||| || || || ||
Sbjct 9056422 CGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCAGATTT 9056481
Query 41957 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 42016
|| || | ||| |||| ||||| || || ||||||| || || || | | |||
Sbjct 9056482 ACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAGAC----GAT 9056537
Query 42017 CTTACTGTTTC-TTCAC---TCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 42072
|| | || | | ||||| | || | | || | || | ||||||| | || ||
Sbjct 9056538 CTCAATGATGCGTTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATCATAACCGCAAA 9056597
Query 42073 ATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 42132
||||| ||||| |||||||| | || | ||||| || || || || ||||||||
Sbjct 9056598 GTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCAT 9056657
Query 42133 TAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTC 42192
||||||||||||||||||||| || || || ||||| || ||||||||| |||||
Sbjct 9056658 TAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTTC 9056717
Query 42193 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--CTGTCATG-TATCCACTT 42249
|| || || |||||||||| | ||| ||| | |||| || ||| |||||
Sbjct 9056718 GACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAAATCCAAGA 9056777
Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309
| ||||| || ||||| |||||| ||||| ||||| || ||||| ||||||||
Sbjct 9056778 GAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTGAAGAGATA 9056837
Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369
| | || | |||| | ||| || ||||| | | ||| ||||| ||||| ||
Sbjct 9056838 ATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGAGTG 9056897
Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429
| || || ||||| |||||||| || ||||| || | ||||| |||| ||| |||||
Sbjct 9056898 TACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTTC 9056957
Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489
| ||| || ||| | | ||| ||||| || || || || ||| || || || ||
Sbjct 9056958 CTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAGC 9057017
Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549
||| |||||| || |||| || | |||||| ||| || | || ||
Sbjct 9057018 CAACACATGTGAAATGAAATGACGCTCATTGTCTGTTAAGCGTACCCAGTCCGTCATGTC 9057077
Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596
|| |||| ||| || || || || ||||| ||||||||||| ||||
Sbjct 9057078 CTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGCCT 9057124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670992891654400
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