Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq17434 423 3e-113 seq17439 271 1e-67 >seq17434 Length=8399593 Score = 423 bits (468), Expect = 3e-113 Identities = 1224/1878 (65%), Gaps = 31/1878 (2%) Strand=Plus/Plus Query 70823 CGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAAT 70882 |||||| ||| || ||||| ||||| || || || |||||| |||| |||||||| Sbjct 1622274 CGGCTT-CGTGCGAAGATAATACATTCCCGTCTTAAGACCGGCTTTCCACGAGTAAAAAT 1622332 Query 70883 GCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTT 70942 | || || |||||| |||| | || || || | || || || | ||||||||||| Sbjct 1622333 GGATCGATGTCAGTTTGCCATAGTTGGGCTCAGCCACATGTATGTTGAACGACTGACTTT 1622392 Query 70943 GATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCC 71001 |||| ||||| || || | || || |||||||| || | || ||| ||| |||||| Sbjct 1622393 GATCAATGAATGCCCCGCGATCGGCTGCCATTTTGATCGTTGT-TTTCACGGATATTTCC 1622451 Query 71002 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG--TTTG-TATTCTGAATGGAT 71058 || | || ||||| | | | | || || ||| | | || | | || || || ||| Sbjct 1622452 CACACGGTCTTATACAGATCCCTCACATTTTTTGGTATGGATTCGATGTTTTGTATTGAT 1622511 Query 71059 CCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 71118 || | | || || || ||| || || || |||| ||| || | ||| |||||| Sbjct 1622512 CCTCGACTGGCGATTATTTGATTCTTCATATCATCATCCCACAAGTCCAGCTCCGTTAAA 1622571 Query 71119 ACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 71178 | | | | |||| |||| || || || || || || |||| || | || ||||| Sbjct 1622572 TCACGCAACAAATGATGATTCACCACCTGGAACTCACCGGACAGCACGCGTCGGGTGTAG 1622631 Query 71179 ATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 71238 || || ||||||||| || | || |||||||| |||| |||||||| || ||||| Sbjct 1622632 ATGTTTGAGGTATACGGCTCAAACGATTCATTATTGCCCATTATTTGAGCCGTAGATGCG 1622691 Query 71239 GTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATG-----TGATCGGATTTTAT 71293 || ||||| || || || | ||| ||| | | |||||| |||||| | Sbjct 1622692 GTTGGCATGGGCGCAACAAGCAGAGAATTGCGCACACCATGCTCCTTGATCGAC----AG 1622747 Query 71294 CTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNN 71353 ||| || || | ||| | ||| ||||| | |||| Sbjct 1622748 CTTA-AGCGAGTTCCAGTCCCAGAGATCGGTTGGTGTCTTGCCCCACATATCGTACTGTA 1622806 Query 71354 NNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTA 71413 || || || ||| | ||||| ||| || || || |||||||| |||| ||| | Sbjct 1622807 AGATACCCTTGCTAACTGGACTTCCTGGATAGGTTTCATAGGGTCCTTCCTTTTGGGCCA 1622866 Query 71414 GTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGAT 71473 ||| || || || || | ||| ||| |||| |||||||| || || | | ||| | | Sbjct 1622867 ATTCGCAGCTGGCTTCCAGTGCGCCAAAATAGATGGTTTCAAAGATTTGTTGATTTAAAA 1622926 Query 71474 CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTT 71533 | || || ||| ||| | |||| | | ||||| || || || || ||||||| Sbjct 1622927 GTGCGGCCTCTTCGCTCTCATAAGGATGACGCATTAGAATCAATGCATCCGCGAATCCTT 1622986 Query 71534 GAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGAT 71593 | || |||||||| || |||| || | ||| || | | || || |||| |||| Sbjct 1622987 GCACACCAATACCAATGGGTCGATGGCGAAAATTGGATTTCTTTGCCTCCGGAAGCGGAT 1623046 Query 71594 AATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTA 71653 | || || || || || |||||||| | ||| || || | |||| || || || | Sbjct 1623047 AGTAGTTGATGTCAATTATTTTATTCAAATTCTTGGTTACTGTTTTGGTGACTTCTTTCA 1623106 Query 71654 GTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCA 71710 |||| || || | | || | ||||||| |||||| |||| ||||| | Sbjct 1623107 GTTTCTTGAAGTCGTACGTTTTGTCGGACGTCACAAACATGTTCAATGCAATCGATGCTA 1623166 Query 71711 GATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTAC 71770 ||| || ||||| | |||| | | | ||| | | |||||||||||| ||||||| Sbjct 1623167 AATTGCACACGGCAATTTCATCGGGTGCCGAATACTCGACAATTTCAGTGCATAGATTAC 1623226 Query 71771 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 71830 | || |||||||| || | |||||| ||||| ||||| ||| || | ||||| | | Sbjct 1623227 TGCATTTGATGGTGCCCACATTTTGCTGATTGCTCTTGCGGTTGCATGAGTCCTTGAACA 1623286 Query 71831 GAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 71890 | || | || || ||||| || | ||| | ||| || || || ||| | | ||| Sbjct 1623287 GCATGTAAGGTGTGCCAGTCTCCACCTGTGCTTCAATGATGGCAAACCAAAGTGTTTGAG 1623346 Query 71891 CCTTTATTATATTCTTGTATCTCTTTTC--TCTTTC--GTATTGTGTATATAATCGTTCG 71946 | || |||| || | || |||| | |||||| |||||| || | | || Sbjct 1623347 CTTTAATTA----CTCGATTCGCTTTGCCCTCTTTCTCGTATTGAACGTACAGTTTCTCA 1623402 Query 71947 AACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCAC 72006 || ||||| |||||| ||| | | || ||||| | || || ||||||| ||||| Sbjct 1623403 AAATCGTCGCCCCAAACATCTTGGAGGCCGGGACACTTATGTGGGCACATCAGGGACCAA 1623462 Query 72007 TCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 72066 || ||| | | || ||||||||||| |||||||| ||||| | || ||| || Sbjct 1623463 TCCTCATTGGCTTCGACGCGTTTCATAAACAGATCAGGTATCCATAAGGCATAAAACAGC 1623522 Query 72067 TCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 72126 || | | | ||||||||| || || || || || || | ||| | || | | ||| Sbjct 1623523 TCACGTGCCCGATGCTCCTCTTTGCCCGTGTTTTTCTTCAAATCCATAAATTCTAATATA 1623582 Query 72127 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGA 72186 || ||||||||||| ||||| || ||||| | | ||||| || || || |||||| Sbjct 1623583 TCCGAATGCCACGGCTCCAAATAGATGGCAAATGCACCCGGTCGCTTACCGCCACCCTGA 1623642 Query 72187 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCA 72246 || | || | || ||||| | || | || |||||| | | ||||| || | Sbjct 1623643 TCCACATAGCGTGCCACATTATTGAATACACGCAGCATTGGCACCAGCCCATTCGAAGTG 1623702 Query 72247 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATT 72306 ||||| || || | || || | || ||||||||||| || || || || Sbjct 1623703 CCATTCGTGCCACAAATCGAGGTGCCTTTGGCACGAATACAATGAACGTTCAGCCCGATG 1623762 Query 72307 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 72366 || || || ||| ||||| | |||||| ||| | | | | |||||||| || Sbjct 1623763 CCACCAGCGGCTTTGGAGATCATGGCGCATTGTTCGACGGATTTGAAAATGCCCTCAATC 1623822 Query 72367 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 72426 ||| | |||| | | || ||||| |||||||| ||||| | || | || Sbjct 1623823 GAATCGGAGACCATGGTTAAAAGGAAACACGACGACATTTGCGGACGATTTGTGGCAGCG 1623882 Query 72427 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 72486 ||| | || || || || ||||| || | |||||||||| ||||| || ||||| Sbjct 1623883 GCAAAAAGTGTTGGCGATGCATGCGTGAAGTACCTTTCAGACAGCAGATTATAGGTCTCC 1623942 Query 72487 ATAGCTGATTCTATATCCCATTG--ATGTATTCCTACCGCGACACGCATTAACATATGCT 72544 | ||| | || |||| ||| | |||||| || | || ||| ||||| | ||| |||| Sbjct 1623943 ACAGCAGCATCAATAT--CATCGCCATGTATCCCAATCGAGACGCGCATCAGCATGTGCT 1624000 Query 72545 GAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 72604 | || | || | || |||| |||||| |||| ||| || ||| || | || |||| Sbjct 1624001 GTGGACGCTCTGCTATTTTGTGATTTATCTTCAGCAAATACGATCGCTCGAGCGTCTTAA 1624060 Query 72605 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCT 72664 | |||||||| || || |||||| || ||||| || || | ||||| | ||| Sbjct 1624061 ATCCAAAATAATTATAGCCAAAGTCACGATCGTAGATGATCGCAGAATTTAAGCGATCGG 1624120 Query 72665 TATATTTGTTAACTATAT 72682 || ||| ||||| |||| Sbjct 1624121 CATGTTTCTTAACAATAT 1624138 >seq17439 Length=18325388 Score = 271 bits (300), Expect = 1e-67 Identities = 559/827 (68%), Gaps = 11/827 (1%) Strand=Plus/Plus Query 41777 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCC 41836 || ||||| ||||| || || |||||||| || || || |||||||| || ||||| Sbjct 9056302 TGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCC 9056361 Query 41837 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 41896 |||||| ||| ||||| | ||||| ||||| | || | || | ||| Sbjct 9056362 ATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAGCTCCACCAACAAG 9056421 Query 41897 CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 41956 | ||| || | ||| || |||||| ||||| |||||||||| || || || || Sbjct 9056422 CGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCAGATTT 9056481 Query 41957 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 42016 || || | ||| |||| ||||| || || ||||||| || || || | | ||| Sbjct 9056482 ACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAGAC----GAT 9056537 Query 42017 CTTACTGTTTC-TTCAC---TCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 42072 || | || | | ||||| | || | | || | || | ||||||| | || || Sbjct 9056538 CTCAATGATGCGTTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATCATAACCGCAAA 9056597 Query 42073 ATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 42132 ||||| ||||| |||||||| | || | ||||| || || || || |||||||| Sbjct 9056598 GTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCAT 9056657 Query 42133 TAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTC 42192 ||||||||||||||||||||| || || || ||||| || ||||||||| ||||| Sbjct 9056658 TAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTTC 9056717 Query 42193 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--CTGTCATG-TATCCACTT 42249 || || || |||||||||| | ||| ||| | |||| || ||| ||||| Sbjct 9056718 GACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAAATCCAAGA 9056777 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 | ||||| || ||||| |||||| ||||| ||||| || ||||| |||||||| Sbjct 9056778 GAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTGAAGAGATA 9056837 Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369 | | || | |||| | ||| || ||||| | | ||| ||||| ||||| || Sbjct 9056838 ATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGAGTG 9056897 Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 | || || ||||| |||||||| || ||||| || | ||||| |||| ||| ||||| Sbjct 9056898 TACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTTC 9056957 Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 | ||| || ||| | | ||| ||||| || || || || ||| || || || || Sbjct 9056958 CTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAGC 9057017 Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549 ||| |||||| || |||| || | |||||| ||| || | || || Sbjct 9057018 CAACACATGTGAAATGAAATGACGCTCATTGTCTGTTAAGCGTACCCAGTCCGTCATGTC 9057077 Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 || |||| ||| || || || || ||||| ||||||||||| |||| Sbjct 9057078 CTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGCCT 9057124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670992891654400