Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq17434 159 4e-34 seq17440 105 7e-18 >seq17434 Length=8399593 Score = 159 bits (176), Expect = 4e-34 Identities = 557/854 (65%), Gaps = 18/854 (2%) Strand=Plus/Plus Query 156767 GCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTC 156826 |||| |||| | ||||| || || || || ||| | |||||| ||||||| ||| Sbjct 1622863 GCCAATTCGCAGCTGGCTTCCAGTGCGCCAAAATAGATGGTTTCAAAGATTTGTTGATTT 1622922 Query 156827 AATAGAACGGCAGCATCGCTCACGTACGGTATG-CGCAACATAACAAATGCATCGGCCAA 156885 || || |||| | |||||| | || || ||| |||| | || |||||||| || || Sbjct 1622923 AAAAGTGCGGCCTCTTCGCTCTCATAAGG-ATGACGCATTAGAATCAATGCATCCGCGAA 1622981 Query 156886 ACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAAT 156945 ||||| | ||||| || ||||| |||||||| | ||| ||||| ||||| || Sbjct 1622982 TCCTTGCACACCAATACCAATGGGTCGATGGCGAAAATTGGATTTCTTTGCCTCCGGAAG 1623041 Query 156946 AGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTACATGTTTGACCACAGT 157005 || ||| | ||| ||||| |||||||||||| | | ||| |||| || Sbjct 1623042 CGGATAGTAGTTGATGTCAATTATTTTATTCAAATTCTTGGTTACTGTTTTGGTGACTTC 1623101 Query 157006 GTGCAATAGTTGAAAATCAAAAGTATCATTAT---TGATATATTTATTGACGGCAATCGA 157062 | || | | || || | || | | | | | | | || | |||||||| Sbjct 1623102 TTTCAGTTTCTTGAAGTCGTACGTTTTGTCGGACGTCACAAACATGTTCAATGCAATCGA 1623161 Query 157063 CGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAA 157122 |||| ||| || |||||| |||| ||||| || |||| | || ||||| | || | Sbjct 1623162 TGCTAAATTGCACACGGCAATTTCATCGGGTGCCGAATACTCGACAATTTCAGTGCATAG 1623221 Query 157123 ATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTT 157182 ||| |||||||| || || ||| |||||||| ||||||||||| | |||||| Sbjct 1623222 ATTACTGCATTTGATGGTGCCCACATTTTGCTGATTGCTCTTGCGGTTGCATGAGTCCTT 1623281 Query 157183 GTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATGTTGCGCATTAATGT 157242 | | | |||||| |||||||| || || | || ||| |||||| || | || || Sbjct 1623282 GAACAGCATGTAAGGTGTGCCAGTCTCCACCTGTGCTTCAATGATG--GCAAACCAAAGT 1623339 Query 157243 AACCGCG-GGCATTTGCTCGCGAAAC-TGGCCTTTATCCTCGTAATGTTTGTACCAGTAT 157300 | | | || |||| | | ||| | | |||||| || ||| |||| | Sbjct 1623340 GTTTGAGCTTTAATTACTCGATTCGCTTTGCCCTCTTTCTCGTATTGAACGTA-CAGTTT 1623398 Query 157301 -TCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGA 157359 ||||| || || || | ||| | ||| ||||||| | || ||||| | || Sbjct 1623399 CTCAAAATCGTCGCCCCAAACATCTTGGAGGCCGGGACACTTATGTGGGCACATCAGGGA 1623458 Query 157360 CCATATAC-CGTTTTCTTCAACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCA 157418 ||| || | | || |||| |||||||||||||| | ||| || | |||||| || | | Sbjct 1623459 CCA-ATCCTCATTGGCTTCGACGCGTTTCATAAACAGATCAGGTATCCATAAGGCATAAA 1623517 Query 157419 TCAAATCACGCGCTTTGGTG-TCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCC 157477 || ||||| || | || || || |||| ||||| || | | || || Sbjct 1623518 ACAGCTCACGTGC-CCGATGCTCCTCTTTGCCCGTGTTTTTCTTCAAATCCATAAATTCT 1623576 Query 157478 ATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTT---GCCA 157534 | || || |||||||||| || | || | || || || |||||| |||| Sbjct 1623577 AATATATCCGAATGCCACGGCTCCAAATAGATGGCAAATGCACCCGGTCGCTTACCGCCA 1623636 Query 157535 CCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTG 157594 || |||||||| | || ||| |||||| || || ||||||||||| | ||| || | Sbjct 1623637 CCCTGATCCACATAGCGTGCCACATTATTGAATACACGCAGCATTGGCACCAGCCCATTC 1623696 Query 157595 GCGGTGCCGTTCGT 157608 | ||||| ||||| Sbjct 1623697 GAAGTGCCATTCGT 1623710 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || || | ||| || ||||| || ||||||||||| | |||| ||||| Sbjct 1558149 ACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCC 1558090 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||| || |||||| |||| | ||| |||||||| ||||| || ||||||||||| Sbjct 1558089 AATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 1558030 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | || |||| ||||| || |||| ||| | ||||| Sbjct 1558029 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 1557970 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | ||||| ||||| |||||||| Sbjct 1557969 CCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941 >seq17440 Length=24565398 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||| ||| || || | || || || || || || ||||| ||| Sbjct 434624 GCCACCCCGCAGACGCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGA 434683 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||| | ||||| || || |||| ||||| |||||||| ||||| Sbjct 434684 CAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGG 434743 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| |||||| || | | ||| | ||||| | ||||| || Sbjct 434744 AATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTAGGTTCCAC 434803 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | ||||| || ||||||||||| ||||| || ||||| Sbjct 434804 TTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 434851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506903870860800