Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq17434 159 4e-34
seq17440 105 7e-18
>seq17434
Length=8399593
Score = 159 bits (176), Expect = 4e-34
Identities = 557/854 (65%), Gaps = 18/854 (2%)
Strand=Plus/Plus
Query 156767 GCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTC 156826
|||| |||| | ||||| || || || || ||| | |||||| ||||||| |||
Sbjct 1622863 GCCAATTCGCAGCTGGCTTCCAGTGCGCCAAAATAGATGGTTTCAAAGATTTGTTGATTT 1622922
Query 156827 AATAGAACGGCAGCATCGCTCACGTACGGTATG-CGCAACATAACAAATGCATCGGCCAA 156885
|| || |||| | |||||| | || || ||| |||| | || |||||||| || ||
Sbjct 1622923 AAAAGTGCGGCCTCTTCGCTCTCATAAGG-ATGACGCATTAGAATCAATGCATCCGCGAA 1622981
Query 156886 ACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAAT 156945
||||| | ||||| || ||||| |||||||| | ||| ||||| ||||| ||
Sbjct 1622982 TCCTTGCACACCAATACCAATGGGTCGATGGCGAAAATTGGATTTCTTTGCCTCCGGAAG 1623041
Query 156946 AGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTACATGTTTGACCACAGT 157005
|| ||| | ||| ||||| |||||||||||| | | ||| |||| ||
Sbjct 1623042 CGGATAGTAGTTGATGTCAATTATTTTATTCAAATTCTTGGTTACTGTTTTGGTGACTTC 1623101
Query 157006 GTGCAATAGTTGAAAATCAAAAGTATCATTAT---TGATATATTTATTGACGGCAATCGA 157062
| || | | || || | || | | | | | | | || | ||||||||
Sbjct 1623102 TTTCAGTTTCTTGAAGTCGTACGTTTTGTCGGACGTCACAAACATGTTCAATGCAATCGA 1623161
Query 157063 CGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAA 157122
|||| ||| || |||||| |||| ||||| || |||| | || ||||| | || |
Sbjct 1623162 TGCTAAATTGCACACGGCAATTTCATCGGGTGCCGAATACTCGACAATTTCAGTGCATAG 1623221
Query 157123 ATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTT 157182
||| |||||||| || || ||| |||||||| ||||||||||| | ||||||
Sbjct 1623222 ATTACTGCATTTGATGGTGCCCACATTTTGCTGATTGCTCTTGCGGTTGCATGAGTCCTT 1623281
Query 157183 GTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATGTTGCGCATTAATGT 157242
| | | |||||| |||||||| || || | || ||| |||||| || | || ||
Sbjct 1623282 GAACAGCATGTAAGGTGTGCCAGTCTCCACCTGTGCTTCAATGATG--GCAAACCAAAGT 1623339
Query 157243 AACCGCG-GGCATTTGCTCGCGAAAC-TGGCCTTTATCCTCGTAATGTTTGTACCAGTAT 157300
| | | || |||| | | ||| | | |||||| || ||| |||| |
Sbjct 1623340 GTTTGAGCTTTAATTACTCGATTCGCTTTGCCCTCTTTCTCGTATTGAACGTA-CAGTTT 1623398
Query 157301 -TCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGA 157359
||||| || || || | ||| | ||| ||||||| | || ||||| | ||
Sbjct 1623399 CTCAAAATCGTCGCCCCAAACATCTTGGAGGCCGGGACACTTATGTGGGCACATCAGGGA 1623458
Query 157360 CCATATAC-CGTTTTCTTCAACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCA 157418
||| || | | || |||| |||||||||||||| | ||| || | |||||| || | |
Sbjct 1623459 CCA-ATCCTCATTGGCTTCGACGCGTTTCATAAACAGATCAGGTATCCATAAGGCATAAA 1623517
Query 157419 TCAAATCACGCGCTTTGGTG-TCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCC 157477
|| ||||| || | || || || |||| ||||| || | | || ||
Sbjct 1623518 ACAGCTCACGTGC-CCGATGCTCCTCTTTGCCCGTGTTTTTCTTCAAATCCATAAATTCT 1623576
Query 157478 ATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTT---GCCA 157534
| || || |||||||||| || | || | || || || |||||| ||||
Sbjct 1623577 AATATATCCGAATGCCACGGCTCCAAATAGATGGCAAATGCACCCGGTCGCTTACCGCCA 1623636
Query 157535 CCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTG 157594
|| |||||||| | || ||| |||||| || || ||||||||||| | ||| || |
Sbjct 1623637 CCCTGATCCACATAGCGTGCCACATTATTGAATACACGCAGCATTGGCACCAGCCCATTC 1623696
Query 157595 GCGGTGCCGTTCGT 157608
| ||||| |||||
Sbjct 1623697 GAAGTGCCATTCGT 1623710
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035
|| || || | ||| || ||||| || ||||||||||| | |||| |||||
Sbjct 1558149 ACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCC 1558090
Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095
| ||| || |||||| |||| | ||| |||||||| ||||| || |||||||||||
Sbjct 1558089 AATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 1558030
Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155
|| || ||| | | ||| | || |||| ||||| || |||| ||| | |||||
Sbjct 1558029 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 1557970
Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| || | ||||| ||||| ||||||||
Sbjct 1557969 CCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941
>seq17440
Length=24565398
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| || || | ||||| ||| || || | || || || || || || ||||| |||
Sbjct 434624 GCCACCCCGCAGACGCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGA 434683
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| |||| ||||| | ||||| || || |||| ||||| |||||||| |||||
Sbjct 434684 CAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGG 434743
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| || || ||||| |||||| || | | ||| | ||||| | ||||| ||
Sbjct 434744 AATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTAGGTTCCAC 434803
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||| | ||| | ||||| || ||||||||||| ||||| || |||||
Sbjct 434804 TTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 434851
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506903870860800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |