Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq17439 223 5e-53 seq17438 183 4e-41 seq17434 138 2e-27 seq17435 134 2e-26 >seq17439 Length=18325388 Score = 223 bits (246), Expect = 5e-53 Identities = 562/842 (67%), Gaps = 32/842 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | || || || ||||| || || ||||| ||||| ||||||||| || || | Sbjct 9057124 AGGCCGAAGCATCATTCTGGACTGTGGAGGAGGTGGATCTATCCAAGGACATGACGGACT 9057065 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 ||| || || || || | |||||| | || || || || | ||||| ||||| | Sbjct 9057064 GGGTA---CGCTTAACAGACAATGAGCGTCATTTCATTTCACATGTGTTGGCTTTCTTCG 9057008 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACGATTCTCTCAAGAGTTGACC 125216 ||| ||||||||| || || ||||| |||||| |||| || || || || || Sbjct 9057007 CCGCCTCCGATGGCATTGTTAACGAGAATCTGGTTGAG-CGCTTTAGCCAGGAAGTGCAG 9056949 Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 ||| |||||| | ||||| || || || || || || ||||| || ||||| || Sbjct 9056948 ATTACAGAGGCGCGCTGCTTCTATGGTTTTCAGATTGCCATGGAGAATGTACACTCAGAG 9056889 Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACAC-ATG--CTC 125333 |||||| | || || |||| || || || ||||| || | | | | || ||| Sbjct 9056888 ATGTACAGTGTGCTAATCGACACTTATATCCGAGATCCTCATC---AGCGCGATTATCTC 9056832 Query 125334 TTTAACGCAATCGACACGGTGCCGTCTATA---CGTAAAAAGGCTCAATGGGTGATTCGG 125390 || || || || || || ||||| || || ||||| ||| | |||| | | Sbjct 9056831 TTCAATGCTATTGAAACAATGCCGGCTGTAAAGCGTAA---GGCGGACTGGGCGCTCTCT 9056775 Query 125391 TGGATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTA 125447 ||||| | | |||| || | || | || | | | || ||||| ||||| Sbjct 9056774 TGGATT--TCATC-CAAGGCTGCCAACTTTGGGGAGCGCATTATTGCCTTCGCTGCCGTC 9056718 Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507 || |||||||||||| || |||||||| ||||||| ||||| || ||||| || || Sbjct 9056717 GAAGGCATCTTCTTTAGCGGCAGTTTTGCCTCCATCTTCTGGCTTAAAAAGCGTGGCCTA 9056658 Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567 |||||||| ||||| | |||||| | || || || || ||||| || || || ||| Sbjct 9056657 ATGCCCGGTCTGACTTTCTCAAACGAGCTCATCTCCCGTGATGAGGGGCTGCATTGCGAC 9056598 Query 125568 TTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAG 125627 ||||| || | |||| | | | ||| || | | || ||||| |||| Sbjct 9056597 TTTGCGGTTATGATGTT---CCAGCACCTG-GTGCAGCGT-----CCCAGCCGTGAACGC 9056547 Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687 |||| | || || | ||||| |||| || || || |||||||| || || | | Sbjct 9056546 ATCATTGAGATCGTCTCGGATGCTGTGACTATTGAGCAGGAGTTTCTCACTGACGCTTTG 9056487 Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747 || || | ||||||||||||| || ||| |||| ||| || || ||||| ||||| Sbjct 9056486 CCTGTAAATCTGATTGGCATGAATTGTGCGCTGATGTCCGAATATATTGAGTTCGTGGCC 9056427 Query 125748 GATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGAT 125807 ||||| | || ||| | || | | || || || ||| | |||||||| ||| | Sbjct 9056426 GATCGCTTGTTGGTGGAGCTCGGTGTCGGTAAAATATATAACACAAAGAATCCATTTACT 9056367 Query 125808 TTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAG 125867 |||||| | || ||| | || ||||| ||||| ||||| |||||||| || |||| Sbjct 9056366 TTCATGGAAATGATTTCATTGGACGGTAAAACCAATTTTTTTGAGAAGAAAGTGGGCGAA 9056307 Query 125868 TA 125869 || Sbjct 9056306 TA 9056305 >seq17438 Length=17193109 Score = 183 bits (202), Expect = 4e-41 Identities = 321/462 (69%), Gaps = 8/462 (2%) Strand=Plus/Minus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 ||||| |||||||| || |||||||| ||||||||| | |||| || || ||||| Sbjct 3984706 GAGGGAGATCTGGGTCCCGTGTACGGTTTCCAGTGGCGTCACTTTGGGGCCGAGTATCGC 3984647 Query 70124 GACTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182 | |||||| ||| |||||| | || ||||| || || || |||||| | |||||||| Sbjct 3984646 GGCTGCGATGAC-GACTATACAGGCCAGGGCGTCGACCAGTTGCAGCAGGTGATTGACAC 3984588 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242 | | |||||| | ||| | | ||| |||||| | |||||||||| ||| | Sbjct 3984587 CATACGCAACAATCCCGCGGATCGTCGCATCATAATGTCCGCATGGAATCCGTTGGATAT 3984528 Query 70243 GCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC---TCGTA--CGAT 70297 | | ||||| || |||||||| ||||| ||| || || | ||| | | | Sbjct 3984527 ACCTAAGATGGCGCTGCCACCGTGCCACTGCCTGGTGCAATTCTTTGTGTCGCAGTCAAG 3984468 Query 70298 GG-CAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTT 70356 || | | | || ||| ||||||||| | |||||||||||||| || ||||| ||||| Sbjct 3984467 GGGCGAGCTCTCCTGCCAGATGTATCAGCGCAGTGCCGACATGGGTCTAGGTGTTCCCTT 3984408 Query 70357 TAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGC 70416 ||||| ||| ||| | || | || | |||||||| || | || || ||||| | Sbjct 3984407 CAACATCGCATCCTACGCCCTGCTCACCTATATGATTGCACATGTGACGGGTCTGAAGCC 3984348 Query 70417 GCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATT 70476 ||| || |||||||| || ||||| | ||||| ||| | ||||| | || || || Sbjct 3984347 TGGCGACTTTGTACACACGATGGGCGATACGCACGTCTATCTGAATCATGTGGAACCGTT 3984288 Query 70477 AAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCT 70518 ||| ||| | |||| | ||| | || ||||||||||| Sbjct 3984287 GCAGGAGCAGATGAAACGTGTGCCACGTCCATTTCCCAAGCT 3984246 >seq17434 Length=8399593 Score = 138 bits (152), Expect = 2e-27 Identities = 335/502 (67%), Gaps = 14/502 (3%) Strand=Plus/Minus Query 96824 TGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CACGATACGTTACACAGGGC 96881 ||| || ||||||||||| | | | |||| ||||| |||| || || ||||| Sbjct 1623693 TGGGCTGGTGCCAATGCTGCGTGTATTCAAT--AATGTGGCACGCTATGTGGATCAGGGT 1623636 Query 96882 GGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTT 96941 ||| ||| || || || || | ||| |||| ||||| || ||||| |||| | || Sbjct 1623635 GGCGGTAAGCGACCGGGTGCATTTGCCATCTATTTGGAGCCGTGGCATTCGGATATATTA 1623576 Query 96942 GACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTT 97001 || ||||| || || |||||| | ||| || ||| || || | || ||||| Sbjct 1623575 GAATTTATGGATTTGAAGAAAAACACGGGCAAAGAGGAGCATCGGGCACGTGAGCTGTTT 1623516 Query 97002 TATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGC 97061 ||||| | ||| | || ||| |||| ||||| |||||| | | | || | ||| | Sbjct 1623515 TATGCCTTATGGATACCTGATCTGTTTATGAAACGCGTCGAAGCCAATGAGGATTGGTCC 1623456 Query 97062 CTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCC 97121 || |||||||| | || ||||| || ||| |||||||| || |||||| Sbjct 1623455 CTGATGTGCCCACATAAGTGTCCCGGCCTCCAAGATGTTTGGGGCGACGATTTTGAG--A 1623398 Query 97122 AAGTACACGGCC--TACGAGCAAGAGGGCCGATACGTGAGACGAG---TCGATGCACGAG 97176 || | ||| | |||||| |||||||| | | || |||| | | || | | Sbjct 1623397 AACTGTACGTTCAATACGAGAAAGAGGGC---AAAGCGAATCGAGTAATTAAAGCTCAAA 1623341 Query 97177 AACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACA 97236 ||| ||| |||||| | || ||||| |||||||| || || ||||| || | || Sbjct 1623340 CACTTTGGTTTGCCATCATTGAAGCACAGGTGGAGACTGGCACACCTTACATGCTGTTCA 1623281 Query 97237 AGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATC 97296 |||| | || ||||| ||||| || | | ||||||||||||| || |||| Sbjct 1623280 AGGACTCATGCAACCGCAAGAGCAATCAGCAAAATGTGGGCACCATCAAATGCAGTAATC 1623221 Query 97297 TGTGCACGGAAATTGTAGAGTA 97318 | ||||| |||||||| ||||| Sbjct 1623220 TATGCACTGAAATTGTCGAGTA 1623199 >seq17435 Length=10151454 Score = 134 bits (148), Expect = 2e-26 Identities = 373/570 (65%), Gaps = 14/570 (2%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | |||||||| ||||| || || || | | || ||||||||||| || ||| Sbjct 2023659 TTGCGGAAGAAGATGACACCGGCACGTGGTCCACGCAACGTTTTGTGCGTTGTCGTCGTC 2023600 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| || | || || || || | | | |||| | || |||| | Sbjct 2023599 ACAATGTCGGCGTATTGGAATGGCGAGGGTATCTGCTCGGCGGCAACGAGACCGGCAACG 2023540 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 ||||| ||||||||||| || ||| |||| | | || |||| ||||| |||| | Sbjct 2023539 TGTGCCATATCGGCCATTAGATAGGCGCCGACCTCGTCACAGATCTTGCGGAAGCGTCCA 2023480 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||||| | || | |||||| | |||| || ||||| | | || |||| Sbjct 2023479 TAGTCCAGCAGACGTGAATAGCACGAGATGCCCGCAATGATGATCTGGGGACGGAATGTG 2023420 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 ||| ||| || || || ||||||| | ||| || ||| | || ||||| ||| Sbjct 2023419 CGAGCAGCCTCCGCGAGCTTATCATAGTCAATGAGGCCCGTCACCGCATTAACCTTATAC 2023360 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449 ||||| || || || || | ||||| || || | || ||| ||| || Sbjct 2023359 GGCATACTCTCAAAGAATATCGATGTGGCTGAGATTTTCTTGCTGGGCGTAAAGAAGCCA 2023300 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 ||||||| || || || ||||||| ||| | ||||| || | | |||| ||| | Sbjct 2023299 TGCGTCAAATGTCCACCATCGGGCAAATCCAAGCCCATAATGCGATCGTGTGGTCGCAGC 2023240 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | || || ||| | || || || ||| || ||||| |||||||| ||| || ||| Sbjct 2023239 ACGCCCGTATACGCAGCCAAATTCGCCGGAGAACCCGAATACGGTTGCACATTGACGCCC 2023180 Query 127570 CATTCGGACTCGTTCAAATTGAA-CGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 || ||| | ||| || || |||| || || ||| ||| || | | || || Sbjct 2023179 CACTCGCTGCTATCCAAGTTAAAGAGCTCCAAGCCA-CGCGACTGAGCCATTCGCTCAAT 2023121 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTA 127658 ||||||| |||| || || |||||||| Sbjct 2023120 CTGATCGATGCACTCATTGCCGCCATAGTA 2023091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740897649094400