Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq17439 223 5e-53
seq17438 183 4e-41
seq17434 138 2e-27
seq17435 134 2e-26
>seq17439
Length=18325388
Score = 223 bits (246), Expect = 5e-53
Identities = 562/842 (67%), Gaps = 32/842 (4%)
Strand=Plus/Minus
Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097
|||| | || || || ||||| || || ||||| ||||| ||||||||| || || |
Sbjct 9057124 AGGCCGAAGCATCATTCTGGACTGTGGAGGAGGTGGATCTATCCAAGGACATGACGGACT 9057065
Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157
||| || || || || | |||||| | || || || || | ||||| ||||| |
Sbjct 9057064 GGGTA---CGCTTAACAGACAATGAGCGTCATTTCATTTCACATGTGTTGGCTTTCTTCG 9057008
Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACGATTCTCTCAAGAGTTGACC 125216
||| ||||||||| || || ||||| |||||| |||| || || || || ||
Sbjct 9057007 CCGCCTCCGATGGCATTGTTAACGAGAATCTGGTTGAG-CGCTTTAGCCAGGAAGTGCAG 9056949
Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276
||| |||||| | ||||| || || || || || || ||||| || ||||| ||
Sbjct 9056948 ATTACAGAGGCGCGCTGCTTCTATGGTTTTCAGATTGCCATGGAGAATGTACACTCAGAG 9056889
Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACAC-ATG--CTC 125333
|||||| | || || |||| || || || ||||| || | | | | || |||
Sbjct 9056888 ATGTACAGTGTGCTAATCGACACTTATATCCGAGATCCTCATC---AGCGCGATTATCTC 9056832
Query 125334 TTTAACGCAATCGACACGGTGCCGTCTATA---CGTAAAAAGGCTCAATGGGTGATTCGG 125390
|| || || || || || ||||| || || ||||| ||| | |||| | |
Sbjct 9056831 TTCAATGCTATTGAAACAATGCCGGCTGTAAAGCGTAA---GGCGGACTGGGCGCTCTCT 9056775
Query 125391 TGGATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTA 125447
||||| | | |||| || | || | || | | | || ||||| |||||
Sbjct 9056774 TGGATT--TCATC-CAAGGCTGCCAACTTTGGGGAGCGCATTATTGCCTTCGCTGCCGTC 9056718
Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507
|| |||||||||||| || |||||||| ||||||| ||||| || ||||| || ||
Sbjct 9056717 GAAGGCATCTTCTTTAGCGGCAGTTTTGCCTCCATCTTCTGGCTTAAAAAGCGTGGCCTA 9056658
Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567
|||||||| ||||| | |||||| | || || || || ||||| || || || |||
Sbjct 9056657 ATGCCCGGTCTGACTTTCTCAAACGAGCTCATCTCCCGTGATGAGGGGCTGCATTGCGAC 9056598
Query 125568 TTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAG 125627
||||| || | |||| | | | ||| || | | || ||||| ||||
Sbjct 9056597 TTTGCGGTTATGATGTT---CCAGCACCTG-GTGCAGCGT-----CCCAGCCGTGAACGC 9056547
Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687
|||| | || || | ||||| |||| || || || |||||||| || || | |
Sbjct 9056546 ATCATTGAGATCGTCTCGGATGCTGTGACTATTGAGCAGGAGTTTCTCACTGACGCTTTG 9056487
Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747
|| || | ||||||||||||| || ||| |||| ||| || || ||||| |||||
Sbjct 9056486 CCTGTAAATCTGATTGGCATGAATTGTGCGCTGATGTCCGAATATATTGAGTTCGTGGCC 9056427
Query 125748 GATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGAT 125807
||||| | || ||| | || | | || || || ||| | |||||||| ||| |
Sbjct 9056426 GATCGCTTGTTGGTGGAGCTCGGTGTCGGTAAAATATATAACACAAAGAATCCATTTACT 9056367
Query 125808 TTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAG 125867
|||||| | || ||| | || ||||| ||||| ||||| |||||||| || ||||
Sbjct 9056366 TTCATGGAAATGATTTCATTGGACGGTAAAACCAATTTTTTTGAGAAGAAAGTGGGCGAA 9056307
Query 125868 TA 125869
||
Sbjct 9056306 TA 9056305
>seq17438
Length=17193109
Score = 183 bits (202), Expect = 4e-41
Identities = 321/462 (69%), Gaps = 8/462 (2%)
Strand=Plus/Minus
Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123
||||| |||||||| || |||||||| ||||||||| | |||| || || |||||
Sbjct 3984706 GAGGGAGATCTGGGTCCCGTGTACGGTTTCCAGTGGCGTCACTTTGGGGCCGAGTATCGC 3984647
Query 70124 GACTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182
| |||||| ||| |||||| | || ||||| || || || |||||| | ||||||||
Sbjct 3984646 GGCTGCGATGAC-GACTATACAGGCCAGGGCGTCGACCAGTTGCAGCAGGTGATTGACAC 3984588
Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242
| | |||||| | ||| | | ||| |||||| | |||||||||| ||| |
Sbjct 3984587 CATACGCAACAATCCCGCGGATCGTCGCATCATAATGTCCGCATGGAATCCGTTGGATAT 3984528
Query 70243 GCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC---TCGTA--CGAT 70297
| | ||||| || |||||||| ||||| ||| || || | ||| | | |
Sbjct 3984527 ACCTAAGATGGCGCTGCCACCGTGCCACTGCCTGGTGCAATTCTTTGTGTCGCAGTCAAG 3984468
Query 70298 GG-CAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTT 70356
|| | | | || ||| ||||||||| | |||||||||||||| || ||||| |||||
Sbjct 3984467 GGGCGAGCTCTCCTGCCAGATGTATCAGCGCAGTGCCGACATGGGTCTAGGTGTTCCCTT 3984408
Query 70357 TAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGC 70416
||||| ||| ||| | || | || | |||||||| || | || || ||||| |
Sbjct 3984407 CAACATCGCATCCTACGCCCTGCTCACCTATATGATTGCACATGTGACGGGTCTGAAGCC 3984348
Query 70417 GCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATT 70476
||| || |||||||| || ||||| | ||||| ||| | ||||| | || || ||
Sbjct 3984347 TGGCGACTTTGTACACACGATGGGCGATACGCACGTCTATCTGAATCATGTGGAACCGTT 3984288
Query 70477 AAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCT 70518
||| ||| | |||| | ||| | || |||||||||||
Sbjct 3984287 GCAGGAGCAGATGAAACGTGTGCCACGTCCATTTCCCAAGCT 3984246
>seq17434
Length=8399593
Score = 138 bits (152), Expect = 2e-27
Identities = 335/502 (67%), Gaps = 14/502 (3%)
Strand=Plus/Minus
Query 96824 TGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CACGATACGTTACACAGGGC 96881
||| || ||||||||||| | | | |||| ||||| |||| || || |||||
Sbjct 1623693 TGGGCTGGTGCCAATGCTGCGTGTATTCAAT--AATGTGGCACGCTATGTGGATCAGGGT 1623636
Query 96882 GGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTT 96941
||| ||| || || || || | ||| |||| ||||| || ||||| |||| | ||
Sbjct 1623635 GGCGGTAAGCGACCGGGTGCATTTGCCATCTATTTGGAGCCGTGGCATTCGGATATATTA 1623576
Query 96942 GACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTT 97001
|| ||||| || || |||||| | ||| || ||| || || | || |||||
Sbjct 1623575 GAATTTATGGATTTGAAGAAAAACACGGGCAAAGAGGAGCATCGGGCACGTGAGCTGTTT 1623516
Query 97002 TATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGC 97061
||||| | ||| | || ||| |||| ||||| |||||| | | | || | ||| |
Sbjct 1623515 TATGCCTTATGGATACCTGATCTGTTTATGAAACGCGTCGAAGCCAATGAGGATTGGTCC 1623456
Query 97062 CTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCC 97121
|| |||||||| | || ||||| || ||| |||||||| || ||||||
Sbjct 1623455 CTGATGTGCCCACATAAGTGTCCCGGCCTCCAAGATGTTTGGGGCGACGATTTTGAG--A 1623398
Query 97122 AAGTACACGGCC--TACGAGCAAGAGGGCCGATACGTGAGACGAG---TCGATGCACGAG 97176
|| | ||| | |||||| |||||||| | | || |||| | | || | |
Sbjct 1623397 AACTGTACGTTCAATACGAGAAAGAGGGC---AAAGCGAATCGAGTAATTAAAGCTCAAA 1623341
Query 97177 AACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACA 97236
||| ||| |||||| | || ||||| |||||||| || || ||||| || | ||
Sbjct 1623340 CACTTTGGTTTGCCATCATTGAAGCACAGGTGGAGACTGGCACACCTTACATGCTGTTCA 1623281
Query 97237 AGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATC 97296
|||| | || ||||| ||||| || | | ||||||||||||| || ||||
Sbjct 1623280 AGGACTCATGCAACCGCAAGAGCAATCAGCAAAATGTGGGCACCATCAAATGCAGTAATC 1623221
Query 97297 TGTGCACGGAAATTGTAGAGTA 97318
| ||||| |||||||| |||||
Sbjct 1623220 TATGCACTGAAATTGTCGAGTA 1623199
>seq17435
Length=10151454
Score = 134 bits (148), Expect = 2e-26
Identities = 373/570 (65%), Gaps = 14/570 (2%)
Strand=Plus/Minus
Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161
|||||| | |||||||| ||||| || || || | | || ||||||||||| || |||
Sbjct 2023659 TTGCGGAAGAAGATGACACCGGCACGTGGTCCACGCAACGTTTTGTGCGTTGTCGTCGTC 2023600
Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221
|||||||| || | || || || || | | | |||| | || |||| |
Sbjct 2023599 ACAATGTCGGCGTATTGGAATGGCGAGGGTATCTGCTCGGCGGCAACGAGACCGGCAACG 2023540
Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281
||||| ||||||||||| || ||| |||| | | || |||| ||||| |||| |
Sbjct 2023539 TGTGCCATATCGGCCATTAGATAGGCGCCGACCTCGTCACAGATCTTGCGGAAGCGTCCA 2023480
Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341
||||||| | || | |||||| | |||| || ||||| | | || ||||
Sbjct 2023479 TAGTCCAGCAGACGTGAATAGCACGAGATGCCCGCAATGATGATCTGGGGACGGAATGTG 2023420
Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401
||| ||| || || || ||||||| | ||| || ||| | || ||||| |||
Sbjct 2023419 CGAGCAGCCTCCGCGAGCTTATCATAGTCAATGAGGCCCGTCACCGCATTAACCTTATAC 2023360
Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449
||||| || || || || | ||||| || || | || ||| ||| ||
Sbjct 2023359 GGCATACTCTCAAAGAATATCGATGTGGCTGAGATTTTCTTGCTGGGCGTAAAGAAGCCA 2023300
Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509
||||||| || || || ||||||| ||| | ||||| || | | |||| ||| |
Sbjct 2023299 TGCGTCAAATGTCCACCATCGGGCAAATCCAAGCCCATAATGCGATCGTGTGGTCGCAGC 2023240
Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569
| || || ||| | || || || ||| || ||||| |||||||| ||| || |||
Sbjct 2023239 ACGCCCGTATACGCAGCCAAATTCGCCGGAGAACCCGAATACGGTTGCACATTGACGCCC 2023180
Query 127570 CATTCGGACTCGTTCAAATTGAA-CGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628
|| ||| | ||| || || |||| || || ||| ||| || | | || ||
Sbjct 2023179 CACTCGCTGCTATCCAAGTTAAAGAGCTCCAAGCCA-CGCGACTGAGCCATTCGCTCAAT 2023121
Query 127629 GCGATCGATAAACTCGTTACCACCATAGTA 127658
||||||| |||| || || ||||||||
Sbjct 2023120 CTGATCGATGCACTCATTGCCGCCATAGTA 2023091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740897649094400
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