Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq17434 98.7 7e-16
seq17436 93.3 3e-14
>seq17434
Length=8399593
Score = 98.7 bits (108), Expect = 7e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226
|| || ||||| || ||||||||||| ||| | | | ||||| ||||| ||||||
Sbjct 1558137 GTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCAATTGCTTGCCA 1558078
Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286
|| | || ||||| || || || ||||||||||||||||| || ||| ||
Sbjct 1558077 GCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 1558018
Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346
||| |||| |||||||| ||| || || | || ||||| ||||| || || |||
Sbjct 1558017 ACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTT 1557958
Query 15347 TTTACAAAAATTTGCAT 15363
|| || || ||||||||
Sbjct 1557957 TTAACGAAGATTTGCAT 1557941
>seq17436
Length=11997470
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || || ||||| ||||| || ||||||||||| ||| | | | |||||
Sbjct 6692832 ACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCC 6692773
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || ||||| ||| | |||| ||| || || || ||||| || || |||||
Sbjct 6692772 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 6692713
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| ||| ||| ||| | || ||||||||| | || || || ||||| ||||| ||
Sbjct 6692712 ATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTG 6692653
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| |||| |||||| || || || |||||
Sbjct 6692652 CCAGTCAAAGTTTTGACGAAGATCTGCAT 6692624
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || || ||||| || || || ||||||||||| ||| | | | |||||
Sbjct 6692148 ACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCC 6692089
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || ||||| || | |||| ||| || || || ||||| || || |||||
Sbjct 6692088 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 6692029
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| ||| ||| ||| | || ||||||||| | || || || ||||| ||||| ||
Sbjct 6692028 ATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTG 6691969
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367
|| |||| ||| || || ||||| |||||||||
Sbjct 6691968 CCAGTCAAAGTCTTGACGAAAATCTGCATATTT 6691936
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || || ||||| ||||| || ||||||||||| ||| | | | |||||
Sbjct 6692376 ACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCC 6692317
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || ||||| || | |||| ||| || || || ||||| || || |||||
Sbjct 6692316 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 6692257
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| ||| ||| ||| | || ||||||||| | || || || ||||| ||||| ||
Sbjct 6692256 ATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTG 6692197
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| |||| ||| || || || || |||||
Sbjct 6692196 CCAGTCAAAGTCTTGACGAAGATCTGCAT 6692168
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || || ||||| || || || ||||||||||| ||| | | | |||||
Sbjct 6693288 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCC 6693229
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || ||||| ||| | |||| ||| || || || ||||| || || |||||
Sbjct 6693228 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 6693169
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| ||| ||| ||| | || |||||||| | || || || ||||| ||||| ||
Sbjct 6693168 ATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTG 6693109
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| |||| |||||| || || || |||||
Sbjct 6693108 CCAGTCAAAGTTTTGACGAAGATCTGCAT 6693080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362102218811040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |