Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq11536 731 0.0 >seq11536 Length=2982 Score = 731 bits (810), Expect = 0.0 Identities = 780/1019 (77%), Gaps = 12/1019 (1%) Strand=Plus/Plus Query 44327 TACCATATCCGCGGTCGCATCATTCAGGTACCGTCAAACTATGACCCGGAAAAACGCACT 44386 || ||| | ||||| || || | ||||| ||||| |||||| ||||| | | || Sbjct 1969 TATCATCTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCAA 2028 Query 44387 TACAGCGGTATCTGGGACGGCAGCCTGAAACCGGCATACAGCAATAACCCGGCCTGGTGC 44446 |||||||||||||||||||| | | ||||||||||||||||| ||| ||||||||| Sbjct 2029 TACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTGT 2088 Query 44447 CTGTGGGACATGCTGACCCACCCGCGCTACGGAATGGGAAAACGTCTGGGGGCGGCGGAT 44506 |||||||| ||||||||||| ||||||||||| ||||| |||||||| || ||||||||| Sbjct 2089 CTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGAT 2148 Query 44507 GTGGACAAGTGGGCGCTGTATGCCATCGGGCAGTACTGCGACCAGACGGTCCCGGATGGT 44566 ||||| || ||||||||||||| |||||| ||||||||||||||| | || ||||| || Sbjct 2149 GTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGGC 2208 Query 44567 TTCGGGGGCACAGAGCCGCGGATGACCTTTAATGCGTACCTGTCACAACAGCGTAAGGCG 44626 || || ||||| |||||||| || |||| ||||||||||||| | ||||||||||||| Sbjct 2209 TTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGCG 2268 Query 44627 TGGGACGTTCTCAGTGATTTCTGCTCGGCGATGCGCTGTATGCCGGTATGGAACGGGCAG 44686 ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2269 TGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGTATGGAACGGGCAG 2328 Query 44687 ACGCTGACGTTTGTGCAGGACCGTCCGTCAGATGTGGTGTGGCCCTACACAAACAGTGAT 44746 ||||||||||| ||||||||||| ||||| ||| | |||| |||| | |||| || Sbjct 2329 ACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTATAACCGCAGTAAT 2388 Query 44747 GTGGTGGCTGAC-AATGAAGGTGTGGGATTCCGCTACAGTTTCAGCGCCCTGAAGGACCG 44805 ||||| | || | |||| || | | ||||||||||| |||||||||||||||||||| Sbjct 2389 GTGGT-GATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCCCTGAAGGACCG 2447 Query 44806 TCATACTGCGGTGGAGGTCAGTTACGTCGACCCGCATAACGGCTGGCAGACCTCCACGGA 44865 |||| ||| || ||||| | | | |||||| | ||||||||| |||| | || || Sbjct 2448 CCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAGACGGCGACAGA 2507 Query 44866 ACTGGTGGAAGACCCGGAAGCCATACTGCGCTACGGACGCAACCTGCTGAAGATGGATGC 44925 || || ||||| || | ||||| || ||||| || || | |||||||||||| Sbjct 2508 GCTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACGAAGATGGATGC 2567 Query 44926 GTTCGGCTGCACCAGTCGCGGTCAGGCCCACCGTGCCGGGCTGTGGGTGATAAAGACCGG 44985 || ||||| ||||| || || ||||| ||||| |||||||||||| |||| || || | Sbjct 2568 CTTTGGCTGTACCAGCCGGGGGCAGGCACACCGCGCCGGGCTGTGGCTGATTAAAACAGA 2627 Query 44986 ACTGCTGGAAACGCAGACGGTGGATTTCACGCTCGGGTCACAGGGGCTGCGTCACACACC 45045 |||||||||||||||||| |||||||||| |||| || | ||||| || || ||| Sbjct 2628 ACTGCTGGAAACGCAGACCGTGGATTTCAGCGTCGGCGCAGAAGGGCTTCGCCATGTACC 2687 Query 45046 CGGTGACATTATTGAAATCTGTGATAACGACTATGCCGGGACCATGACCGGCGGACGTGT 45105 || || ||||||||||||| ||| | ||||||||||| | || ||||| || ||||| Sbjct 2688 GGGCGATGTTATTGAAATCTGCGATGATGACTATGCCGGTATCAGCACCGGTGGTCGTGT 2747 Query 45106 CCTGTCCATCGATGCCGCCAG--CCGCACCCTGACGCTGGACCGTGAGGTGACACTGCCG 45163 ||| | | || | ||||| ||| || |||||||| |||||||| | || ||||| Sbjct 2748 GCTGGCGGT-GA-ACAGCCAGACCCGGACGCTGACGCTCGACCGTGAAATCACGCTGCCA 2805 Query 45164 GAGACCGGTGCCGCCACGGTGAACCTGATTAACGGCAGCGGTAAGCCGGTGAGTGTGGA- 45222 ||||| |||| | | | |||| || |||| || || || ||||| || ||||| Sbjct 2806 TCCTCCGGTACCGCGCTGATAAGCCTGGTTGACGGAAGTGGCAATCCGGTCAGCGTGGAG 2865 Query 45223 CATCA--CCGCACACCCCGCGCCGGACCGGATACAGGTCAGCACCCTGCCTGATGGTGTG 45280 ||| ||| |||| || || | || | || ||| | ||||| ||||| Sbjct 2866 GTTCAGTCCG-TCACCGACGGCGTGA--AGGTAAAAGTGAGCCGTGTTCCTGACGGTGTT 2922 Query 45281 GAGACATACGGTGTATGGGGACTATCCCTGCCGTCACTGCGCCGTCGCCTGTTCCGCTG 45339 | |||| | ||||||| || |||||| | ||||||| || ||||||||||| Sbjct 2923 GCTGAATACAGCGTATGGGAGCTGAAGCTGCCGACGCTGCGCCAGCGACTGTTCCGCTG 2981 Score = 508 bits (562), Expect = 2e-139 Identities = 499/637 (78%), Gaps = 8/637 (1%) Strand=Plus/Plus Query 44327 TACCATATC-CGCGGTCGCATCATTCAGGTACCGTCAAACTATGACCCGGAAAAACGCAC 44385 || ||| || ||||| || || | ||||| ||||| |||||| ||||| | | || Sbjct 1 TATCATCTCGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCA 60 Query 44386 TTACAGCGGTATCTGGGACGGCAGCCTGAAACCGGCATACAGCAATAACCCGGCCTGGTG 44445 |||||||||||||||||||| | | ||||||||||||||||| ||| ||||||||| Sbjct 61 ATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTG 120 Query 44446 CCTGTGGGACATGCTGACCCACCCGCGCTACGGAATGGGAAAACGTCTGGGGGCGGCGGA 44505 |||||||| ||||||||||| ||||||||||| ||||| |||||||| || |||||||| Sbjct 121 TCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 180 Query 44506 TGTGGACAAGTGGGCGCTGTATGCCATCGGGCAGTACTGCGACCAGACGGTCCCGGATGG 44565 |||||| || ||||||||||||| |||||| ||||||||||||||| | || ||||| || Sbjct 181 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 240 Query 44566 TTTCGGGGGCACAGAGCCGCGGATGACCTTTAATGCGTACCTGTCACAACAGCGTAAGGC 44625 || || ||||| |||||||| || |||| ||||||||||||| | |||||||||||| Sbjct 241 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGC 300 Query 44626 GTGGGACGTTCTCAGTGATTTCTGCTCGGCGATGCGCTGTATGCC-GGTATGGAACGGGC 44684 |||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 301 GTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGGTATGGAACGGGC 360 Query 44685 AGACGCTGACGTTTGTGCAGGACCGTCCGTCAGATGTGGTGTGGCCCTACACAAACAGTG 44744 ||||||||||||| ||||| ||||| ||||| ||| | |||| |||| | | | Sbjct 361 AGACGCTGACGTTCGTGCATGACCGACCGTCGGATAAGACGTGGACCTATAACCTCTTTA 420 Query 44745 ATGTGGTGGCTGAC-AATGAAGGTGTGGGATTCCGCTACAGTTTCAGCGCCCTGAAGGAC 44803 ||||| | | || | |||| || | | ||||||||||| ||| ||||||||| ||| Sbjct 421 ATGTGAT-GATGCCGGATGATGGCGCGCCTTTCCGCTACAGCTTCTTCGCCCTGAATGAC 479 Query 44804 CGTCATACTGCGGTGGAGGTCAGTTACGTCGACCCGCATAACGGCTGGCAGACCTCCACG 44863 || |||| ||| || ||||| | | | ||||| | ||||||||| |||| | || Sbjct 480 CGCCATAATGCCGTTGAGGTGAACTGGATTGACCCAAACAACGGCTGGGAGACTGCGACA 539 Query 44864 GAACTGGTGGAAGACCCGGAAGCCATACTGC--GCTACGGACGCAACCTGCTGAAGATGG 44921 || || || ||| | || | ||||| ||| | ||| | || || | ||||||| Sbjct 540 GAGCTTGTTGAATATACGCATGCCAT--TGCCTGTTACAGTCGTAATGTTACTAAGATGG 597 Query 44922 ATGCGTTCGGCTGCACCAGTCGCGGTCAGGCCCACCG 44958 |||| || ||||| ||||| || || ||||| ||||| Sbjct 598 ATGCCTTTGGCTGTACCAGCCGGGGGCAGGCACACCG 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185216033813760