Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq17434 118 7e-22
seq17440 82.4 5e-11
>seq17434
Length=8399593
Score = 118 bits (130), Expect = 7e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219
|||||| |||||||| |||||||| || || ||||||||||| | | || | || ||
Sbjct 1558150 CACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTC 1558091
Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279
||||||||| ||| ||| |||||||| ||||| || | || || |||||||| ||
Sbjct 1558090 CAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 1558031
Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339
||| ||| || ||| || || || |||| || || ||||| || || ||
Sbjct 1558030 GATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 1557971
Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| || ||||| ||||| ||||||||
Sbjct 1557970 ACCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941
>seq17440
Length=24565398
Score = 82.4 bits (90), Expect = 5e-11
Identities = 146/212 (69%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
||||| || | ||||||||||| || ||||| || || ||||| || | || |||
Sbjct 435099 ACCAAGTGGAGAGTCGACTCTTTCTGAATATTATAGTCGGACAAGGTGCGACCATCTTCC 435158
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277
|| || ||||| || || | ||| |||||||| | ||| || || || || || |
Sbjct 435159 AACTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGG 435218
Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337
| | ||| || || | | ||| |||||| |||| ||| |||||||| || ||
Sbjct 435219 ATCTTGGCC---TTAACGTTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTGATGGTC 435275
Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || | ||||| ||||| || |||||
Sbjct 435276 TTCCCAGTCAATGTTTTAACGAAGATCTGCAT 435307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318709843821120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |