Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq17436 89.7 4e-13
seq17440 86.0 5e-12
>seq17436
Length=11997470
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
|||||| ||||| || || || || || ||||||||||| | ||| ||||||
Sbjct 6692149 CACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTC 6692090
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
|| || ||||| ||| | || || | ||| ||||| ||| | ||| || |||||
Sbjct 6692089 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 6692030
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
|| || ||||| | ||| | |||| ||| ||| |||| ||| ||||| ||
Sbjct 6692029 GATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTT 6691970
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212
||| ||||| || ||||| ||||| ||||| |||
Sbjct 6691969 GCCAGTCAAAGTCTTGACGAAAATCTGCATATTT 6691936
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
|||||| || || || || ||||| || ||||||||||| | ||| ||||||
Sbjct 6692377 CACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTC 6692318
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
|| || ||||| ||| | || || | ||| ||||| ||| | ||| || |||||
Sbjct 6692317 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 6692258
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
|| || ||||| | ||| | |||| ||| ||| |||| ||| ||||| ||
Sbjct 6692257 GATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTT 6692198
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||| ||||| || ||||| || || |||||
Sbjct 6692197 GCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692168
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
|||||| || || || || ||||| || ||||||||||| | ||| ||||||
Sbjct 6692833 CACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTC 6692774
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
|| || ||||| || | || || | ||| ||||| ||| | ||| || |||||
Sbjct 6692773 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 6692714
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
|| || ||||| | ||| | |||| ||| ||| |||| ||| ||||| ||
Sbjct 6692713 GATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTT 6692654
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||| ||||| |||||||| || || |||||
Sbjct 6692653 GCCAGTCAAAGTTTTGACGAAGATCTGCAT 6692624
>seq17440
Length=24565398
Score = 86.0 bits (94), Expect = 5e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 22333 TTGCCGCGCGGCTTGCACGGTTTTCACGTGCACGAATTTGGCGACACAAGCAATGGGTGC 22392
||| ||| ||||||||||| || || ||||| ||||||||||||| | || || |||
Sbjct 18410373 TTGGCGCAAGGCTTGCACGGCTTCCATGTGCATGAATTTGGCGACAATACAAACGGATGC 18410314
Query 22393 ACGTCGGCAGGCGAGCACTTTAACCCTACGCACCGGCAACATGGCGCGCCTGACGCTGCG 22452
| |||| | || ||||||||| ||| || | | |||||||| || || ||
Sbjct 18410313 ATGTCGTCGGGGCCGCACTTTAATCCTCACCAGAAGGAGCATGGCGCACCAACCGATGGC 18410254
Query 22453 GAGCGTCACGTCGGCGATTTGGGCAAC 22479
| ||||| | |||||||||||||||
Sbjct 18410253 GTTCGTCATCTAGGCGATTTGGGCAAC 18410227
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419498016740640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |