Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq17436 89.7 4e-13 seq17440 86.0 5e-12 >seq17436 Length=11997470 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| ||||| || || || || || ||||||||||| | ||| |||||| Sbjct 6692149 CACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTC 6692090 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 || || ||||| ||| | || || | ||| ||||| ||| | ||| || ||||| Sbjct 6692089 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 6692030 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 || || ||||| | ||| | |||| ||| ||| |||| ||| ||||| || Sbjct 6692029 GATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTT 6691970 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 ||| ||||| || ||||| ||||| ||||| ||| Sbjct 6691969 GCCAGTCAAAGTCTTGACGAAAATCTGCATATTT 6691936 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || || || || ||||| || ||||||||||| | ||| |||||| Sbjct 6692377 CACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTC 6692318 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 || || ||||| ||| | || || | ||| ||||| ||| | ||| || ||||| Sbjct 6692317 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 6692258 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 || || ||||| | ||| | |||| ||| ||| |||| ||| ||||| || Sbjct 6692257 GATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTT 6692198 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| ||||| || ||||| || || ||||| Sbjct 6692197 GCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692168 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || || || || ||||| || ||||||||||| | ||| |||||| Sbjct 6692833 CACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTC 6692774 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 || || ||||| || | || || | ||| ||||| ||| | ||| || ||||| Sbjct 6692773 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 6692714 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 || || ||||| | ||| | |||| ||| ||| |||| ||| ||||| || Sbjct 6692713 GATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTT 6692654 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| ||||| |||||||| || || ||||| Sbjct 6692653 GCCAGTCAAAGTTTTGACGAAGATCTGCAT 6692624 >seq17440 Length=24565398 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 22333 TTGCCGCGCGGCTTGCACGGTTTTCACGTGCACGAATTTGGCGACACAAGCAATGGGTGC 22392 ||| ||| ||||||||||| || || ||||| ||||||||||||| | || || ||| Sbjct 18410373 TTGGCGCAAGGCTTGCACGGCTTCCATGTGCATGAATTTGGCGACAATACAAACGGATGC 18410314 Query 22393 ACGTCGGCAGGCGAGCACTTTAACCCTACGCACCGGCAACATGGCGCGCCTGACGCTGCG 22452 | |||| | || ||||||||| ||| || | | |||||||| || || || Sbjct 18410313 ATGTCGTCGGGGCCGCACTTTAATCCTCACCAGAAGGAGCATGGCGCACCAACCGATGGC 18410254 Query 22453 GAGCGTCACGTCGGCGATTTGGGCAAC 22479 | ||||| | ||||||||||||||| Sbjct 18410253 GTTCGTCATCTAGGCGATTTGGGCAAC 18410227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419498016740640