Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq17434 172 1e-37 seq17440 141 2e-28 seq17438 109 1e-18 seq17439 100 7e-16 seq4835 89.7 1e-12 >seq17434 Length=8399593 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || ||||| || ||||||||||| || || ||||| ||||| | ||| ||||| | ||| Sbjct 1558143 TGCAATGTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCAATTGC 1558084 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| |||| | ||| ||||| ||||| ||||||||||| ||||| ||||| Sbjct 1558083 TTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTG 1558024 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | |||||| ||||| ||||| || || || |||||||| || Sbjct 1558023 GCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTG 1557964 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| Sbjct 1557963 AGGGTTTTAACGAAGATTTGCAT 1557941 >seq17440 Length=24565398 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||| ||||| || | || | ||| ||||| | |||||||| Sbjct 434655 GTCGACTCCTTCTGGATATTGTAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTTCCG 434714 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| ||||| ||||| || || |||||||| || || || Sbjct 434715 GCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATTTTAGCCTTG 434774 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || ||||||||||| || || | || || ||||| ||||| | |||| Sbjct 434775 ACATTTTCAATAGTGTCGCTAGGTTCCACTTCCAAAGTGATGGTCTTTCCAGTCAATGTT 434834 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 434835 TTAACGAAGATCTGCATT 434852 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | || || | || | || || |||||||||||||||||||| Sbjct 435078 ATTCCTCCTCGGAGACGGAGAACCAAGTGGAGAGTCGACTCTTTCTGAATATTATAGTCG 435137 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | ||| ||||| | |||||||| || || || || | ||| || || || Sbjct 435138 GACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGG 435197 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || || || ||||| || || || || || | || ||| |||||| Sbjct 435198 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCA 435257 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || ||||| ||||| | |||||| || || ||||||||| Sbjct 435258 ACCTCCAGAGTGATGGTCTTCCCAGTCAATGTTTTAACGAAGATCTGCATT 435308 >seq17438 Length=17193109 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || ||||| || || || || Sbjct 16961311 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCG 16961370 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||| ||||| || || ||||| || || ||||||||||| || || Sbjct 16961371 GCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTA 16961430 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| | || || ||||| || || ||||| Sbjct 16961431 ACATTCTCGATGGTGTCCGAGGGCTCCACCTCCAAGGTGATGGTCTTCCCGGTGAGTGTC 16961490 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 16961491 TTCACAAAGATTTGCATT 16961508 >seq17439 Length=18325388 Score = 100 bits (110), Expect = 7e-16 Identities = 207/303 (68%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 238582 ACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTT 238641 ||||| || |||||||| || ||| | || |||| | |||||||||||| | | Sbjct 5993647 ACGATGATCTTTGGAATTCGGCTCAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGAT 5993706 Query 238642 TCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTC 238701 | | |||||||||||||| ||||||||||| || ||||| | || || ||| Sbjct 5993707 TTCTGCGAATGTATTGGGCCAAAAAGATACTCGAGTGGACGGCGACGCCGGAGCTGGCT- 5993765 Query 238702 TTAGA-TATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGA 238760 || || ||| | || |||||||| || || || || ||| ||||| || || Sbjct 5993766 TTGGAGTATTGCATACTGCTGAACGACAAGTATAGCCTGGATGGTCGCGATCCCAATGGC 5993825 Query 238761 TACGTAGGTTGTATGTGGTCAATATGTGGATTACACGAT-AGGGCATGGTCTGAGAGACC 238819 || || || || |||||||| || |||| | |||||| ||||| ||| ||| | | Sbjct 5993826 TATGTGGGCTGCATGTGGTCCATTGGTGGTCTTCACGATCAGGGC-TGGAGGGAGCGTGC 5993884 Query 238820 TATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAA 238879 || ||||| ||| | | | |||||| ||| |||| ||| || |||||||| || Sbjct 5993885 CATCTTTGGCAAAATACGCTTCATGAACTATCAAGGCTGCAAGCGGAAGTTTGATGTTAA 5993944 Query 238880 TGC 238882 || Sbjct 5993945 CGC 5993947 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 ||||| || |||||||| ||||| || ||| || | || || || |||||| | || Sbjct 9056999 GATGGCATTGTTAACGAGAATCTGGTTGAGCGCTTTAGCCAGGAAGTGCAGATTACAGAG 9056940 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || | || || || || || ||||| || || || ||| | || ||||||||||||||| Sbjct 9056939 GCGCGCTGCTTCTATGGTTTTCAGATTGCCATGGAGAATGTACACTCAGAGATGTACAGT 9056880 Query 268997 CTATTAATAGATACTTATAT 269016 | |||| || |||||||| Sbjct 9056879 GTGCTAATCGACACTTATAT 9056860 >seq4835 Length=1216 Score = 89.7 bits (98), Expect = 1e-12 Identities = 183/267 (69%), Gaps = 4/267 (1%) Strand=Plus/Minus Query 238582 ACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTT 238641 ||||| || |||||||| || ||| | || |||| | |||||||||||| | | Sbjct 267 ACGATGATCTTTGGAATTCGGCGCAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGAT 208 Query 238642 TCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTC 238701 | | |||||||||||||| ||||||||||| || ||||| | || || ||| Sbjct 207 TTCTGCGAATGTATTGGGCCAAAAAGATACTCGAGTGGACGGCGACGCCGGAGCTGGCT- 149 Query 238702 TTAGA-TATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGA 238760 || || ||| | || |||||||| || || || || ||| ||||| || || Sbjct 148 TTGGAGTATTGCATACTGCTGAACGACAAGTATAGCCTGGATGGTCGTGATCCCAATGGC 89 Query 238761 TACGTAGGTTGTATGTGGTCAATATGTGGATTACACGAT-AGGGCATGGTCTGAGAGACC 238819 || || || || |||||||| || |||| | |||||| ||||| ||| ||| | | Sbjct 88 TATGTGGGCTGCATGTGGTCCATTGGTGGTCTTCACGATCAGGGC-TGGAGGGAGCGTGC 30 Query 238820 TATATTTGGAAAAGTTAGATACATGAA 238846 || ||||| ||| | | | |||||| Sbjct 29 CATCTTTGGCAAAATACGCTTCATGAA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151141120027520