Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq17438 114 1e-20 >seq17438 Length=17193109 Score = 114 bits (126), Expect = 1e-20 Identities = 179/254 (70%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299 || || ||||| || |||| |||||||| |||||||| |||| || |||| | Sbjct 7488485 CCAGTTGAACCAAAGCCAGCCTCGCCGCGTTCGGTGTCCTCCAGTTTGTCGACCTGCTCC 7488544 Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359 | | || | | ||||| ||||| || | ||| ||||| | || || ||| ||| Sbjct 7488545 AGATCCGGATAGAAGATGCGCTCGCAAATGAACTGTGCTATGCGATCGCCACGCTTTACC 7488604 Query 5360 TCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 ||||||||| | |||||| ||| ||||| || || || | ||||| ||||| || | Sbjct 7488605 TCAAAGTCG--GCGTCCGAATGGTTGAACAGGACAACACCCAGGTTGCCGCGGTAATCCT 7488662 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 |||| | ||| || ||||| || ||||| |||| || || || ||||| |||||||| | Sbjct 7488663 CGTCTACAACCCCGGCGCCTACATCGATGAAGTTCTTCACGGCCAGGCCCGAACGTGGCG 7488722 Query 5478 CTATGCGTCCGTAG 5491 | | || || ||| Sbjct 7488723 CCACTCGGCCATAG 7488736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447652790412800