Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq17438 159 3e-34 >seq17438 Length=17193109 Score = 159 bits (176), Expect = 3e-34 Identities = 213/289 (74%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 5503 GCCCGTGGACCCGAATCC-GCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTT 5561 ||| || || || || || |||| |||| | ||| || || ||||| | |||| | Sbjct 7488484 GCCAGTTGAACCAAAGCCAGCCT-CGCCGCGTTCGGTGTCCTCCAGTTTGTCGACCTGCT 7488542 Query 5562 CCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 ||| ||| || | | || ||||||||| || | ||| ||||| || ||||| |||| Sbjct 7488543 CCAGATCCGGATA-GAAGATGCGCTCGCAAATGAACTGTGCTATGCGATCGCCACGCTTT 7488601 Query 5621 ACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 ||||| || ||| || ||||| ||||||||| || || |||| |||||||||||| | Sbjct 7488602 ACCTCAAAGTCGGCGT--CCGAATGGTTGAACAGGACAACACCCAGGTTGCCGCGGTAAT 7488659 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 | |||||| || || ||||| || |||||||||| ||| || |||||||| || || | Sbjct 7488660 CCTCGTCTACAACCCCGGCGCCTACATCGATGAAGTTCTTCACGGCCAGGCCCGAACGTG 7488719 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 | ||||| ||||| ||| | || ||||| | ||| | |||||| || || Sbjct 7488720 GCGCCACTCGGCCATAGGAGCCCTCGGGCACCTGCACCTGCAGATCAGT 7488768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429962991937280