Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq17436 95.1 1e-14 seq17438 91.5 1e-13 >seq17436 Length=11997470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || ||| |||||| || ||||||||||||| | | || || | || | Sbjct 6692149 CACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTG-CGTCCATCTT 6692091 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| | | || | |||||||||||| || | | ||||||||| Sbjct 6692090 CCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 6692031 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | | |||||||||| || |||| ||| | || ||||| | Sbjct 6692030 GGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCT 6691971 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || | ||| || || ||||||||||| Sbjct 6691970 TGCCAGTCAAAGTCTTGACGAAAATCTGCAT 6691940 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || ||| ||| || || ||||||||||||| | | || || | || | Sbjct 6692833 CACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTG-CGTCCATCTT 6692775 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || | |||||||||||| || | | ||||||||| Sbjct 6692774 CCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 6692715 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | | |||||||||| || |||| ||| | || ||||| | Sbjct 6692714 GGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCT 6692655 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || | |||||| || || |||||||| Sbjct 6692654 TGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6692624 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || ||| |||||| || ||||||||||||| | | || || | || | Sbjct 6693289 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTG-CGTCCATCTT 6693231 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || | |||||||||||| || | | ||||||||| Sbjct 6693230 CCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 6693171 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | | |||||||| | || |||| ||| | || ||||| | Sbjct 6693170 GGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCT 6693111 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || | |||||| || || |||||||| Sbjct 6693110 TGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6693080 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || ||| |||||| || || |||||||||| | | || || | || | Sbjct 6692605 CACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGAGTG-CGTCCATCTT 6692547 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || | |||||||||||| || | | ||||||||| Sbjct 6692546 CCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 6692487 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | | |||||||||| || |||| ||| | || ||||| | Sbjct 6692486 GGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCT 6692427 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || | ||| || || || |||||||| Sbjct 6692426 TGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692396 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || ||| |||||| || ||||||||||||| | | || || | || | Sbjct 6693061 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTG-CGTCCATCTT 6693003 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| | | || | |||||||||||| || | | ||||||||| Sbjct 6693002 CCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 6692943 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | | |||||||||| || |||| ||| | || ||||| | Sbjct 6692942 GGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCT 6692883 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || | ||| || || || |||||||| Sbjct 6692882 TGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692852 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || ||| |||||| || ||||||||||||| | | || || | || | Sbjct 6693517 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTG-CGTCCATCTT 6693459 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || | |||||||||||| || | | ||||||||| Sbjct 6693458 CCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 6693399 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | | |||||||| | || |||| ||| | || ||||| | Sbjct 6693398 GGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCT 6693339 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || | ||| || || || |||||||| Sbjct 6693338 TGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6693308 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || ||| ||| || || ||||||||||||| | | || || | || | Sbjct 6692377 CACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTG-CGTCCATCTT 6692319 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| | | || | |||||||||||| || | | ||||||||| Sbjct 6692318 CCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 6692259 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | | |||||||||| || |||| ||| | || ||||| | Sbjct 6692258 GGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCT 6692199 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || | ||| || || || |||||||| Sbjct 6692198 TGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692168 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || ||||||||||||| | | || || | || ||||||||||| ||| || Sbjct 6693727 CTCCTTCTGGATGTTGTAATCAGAAAGAGTG-CGTCCATCTTCCAGCTGCTTGCCGGCGA 6693669 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||||||| || | | ||||||||| || || ||| | | Sbjct 6693668 AGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACAT 6693609 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | | |||||||| | || |||| ||| | || ||||| || || || | ||| || | Sbjct 6693608 TCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGA 6693549 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 6693548 CGAAGATCTGCAT 6693536 >seq17438 Length=17193109 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| | | ||| || || || || |||||| || |||||||| || | | Sbjct 16961281 CCACCGCGCAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 16961340 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | || ||||||||||| ||| | | || |||||||||||||| || Sbjct 16961341 AGGGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGA 16961400 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| ||| || ||| | | | | ||||| || | | |||| | Sbjct 16961401 ATTCCCTCCTTGTCCTGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCACC 16961460 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 || | || ||||| || |||||||| || |||||||| || ||||| || Sbjct 16961461 TCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTCACAAAGATTTGCATTGT 16961510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421161663057440