Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq17436 95.1 1e-14
seq17438 91.5 1e-13
>seq17436
Length=11997470
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575
||| || || || ||| |||||| || ||||||||||||| | | || || | || |
Sbjct 6692149 CACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTG-CGTCCATCTT 6692091
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
|||||||||| ||| | | || | |||||||||||| || | | |||||||||
Sbjct 6692090 CCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 6692031
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
|| || ||| | | | | |||||||||| || |||| ||| | || ||||| |
Sbjct 6692030 GGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCT 6691971
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| || || | ||| || || |||||||||||
Sbjct 6691970 TGCCAGTCAAAGTCTTGACGAAAATCTGCAT 6691940
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575
||| || || || ||| ||| || || ||||||||||||| | | || || | || |
Sbjct 6692833 CACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTG-CGTCCATCTT 6692775
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
|||||||||| ||| || | || | |||||||||||| || | | |||||||||
Sbjct 6692774 CCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 6692715
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
|| || ||| | | | | |||||||||| || |||| ||| | || ||||| |
Sbjct 6692714 GGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCT 6692655
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| || || | |||||| || || ||||||||
Sbjct 6692654 TGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6692624
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575
||| || || || ||| |||||| || ||||||||||||| | | || || | || |
Sbjct 6693289 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTG-CGTCCATCTT 6693231
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
|||||||||| ||| || | || | |||||||||||| || | | |||||||||
Sbjct 6693230 CCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 6693171
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
|| || ||| | | | | |||||||| | || |||| ||| | || ||||| |
Sbjct 6693170 GGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCT 6693111
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| || || | |||||| || || ||||||||
Sbjct 6693110 TGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6693080
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575
||| || || || ||| |||||| || || |||||||||| | | || || | || |
Sbjct 6692605 CACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGAGTG-CGTCCATCTT 6692547
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
|||||||||| ||| || | || | |||||||||||| || | | |||||||||
Sbjct 6692546 CCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 6692487
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
|| || ||| | | | | |||||||||| || |||| ||| | || ||||| |
Sbjct 6692486 GGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCT 6692427
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| || || | ||| || || || ||||||||
Sbjct 6692426 TGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692396
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575
||| || || || ||| |||||| || ||||||||||||| | | || || | || |
Sbjct 6693061 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTG-CGTCCATCTT 6693003
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
|||||||||| ||| | | || | |||||||||||| || | | |||||||||
Sbjct 6693002 CCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 6692943
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
|| || ||| | | | | |||||||||| || |||| ||| | || ||||| |
Sbjct 6692942 GGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCT 6692883
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| || || | ||| || || || ||||||||
Sbjct 6692882 TGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692852
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575
||| || || || ||| |||||| || ||||||||||||| | | || || | || |
Sbjct 6693517 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTG-CGTCCATCTT 6693459
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
|||||||||| ||| || | || | |||||||||||| || | | |||||||||
Sbjct 6693458 CCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 6693399
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
|| || ||| | | | | |||||||| | || |||| ||| | || ||||| |
Sbjct 6693398 GGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCT 6693339
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| || || | ||| || || || ||||||||
Sbjct 6693338 TGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6693308
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575
||| || || || ||| ||| || || ||||||||||||| | | || || | || |
Sbjct 6692377 CACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTG-CGTCCATCTT 6692319
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
|||||||||| ||| | | || | |||||||||||| || | | |||||||||
Sbjct 6692318 CCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 6692259
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
|| || ||| | | | | |||||||||| || |||| ||| | || ||||| |
Sbjct 6692258 GGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCT 6692199
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| || || | ||| || || || ||||||||
Sbjct 6692198 TGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692168
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593
|||||| || ||||||||||||| | | || || | || ||||||||||| ||| ||
Sbjct 6693727 CTCCTTCTGGATGTTGTAATCAGAAAGAGTG-CGTCCATCTTCCAGCTGCTTGCCGGCGA 6693669
Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653
| || | |||||||||||| || | | ||||||||| || || ||| | |
Sbjct 6693668 AGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACAT 6693609
Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713
| | |||||||| | || |||| ||| | || ||||| || || || | ||| || |
Sbjct 6693608 TCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGA 6693549
Query 48714 CAAAAATCTGCAT 48726
| || ||||||||
Sbjct 6693548 CGAAGATCTGCAT 6693536
>seq17438
Length=17193109
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| ||||||| | | ||| || || || || |||||| || |||||||| || | |
Sbjct 16961281 CCACCGCGCAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 16961340
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| || | || ||||||||||| ||| | | || |||||||||||||| ||
Sbjct 16961341 AGGGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGA 16961400
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | ||||||||| ||| || ||| | | | | ||||| || | | |||| |
Sbjct 16961401 ATTCCCTCCTTGTCCTGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCACC 16961460
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729
|| | || ||||| || |||||||| || |||||||| || ||||| ||
Sbjct 16961461 TCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTCACAAAGATTTGCATTGT 16961510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421161663057440
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