Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq17439 118 6e-22 seq17431 111 8e-20 seq17437 104 1e-17 >seq17439 Length=18325388 Score = 118 bits (130), Expect = 6e-22 Identities = 87/101 (86%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||||| || ||| |||||||| |||||||||| |||||||||| || |||||| Sbjct 204491 AAATATAAAAAAAATTAAAAATCA--TTGGCCCATGGGGGGATCGAACCCGCGGCCTTCG 204434 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||| ||||||||||||||| Sbjct 204433 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 204393 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 203753 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 203694 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 203693 TGAGCTAATGGGCC 203680 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| | | |||||||||| |||||||||| || |||||||||||||||||| Sbjct 203610 AAAAAAAATTTATTTTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCAC 203551 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| ||||||||||||||| Sbjct 203550 GACGCTCTAACCAGCTGAGCTAATGGGCC 203522 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 204028 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 203969 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 203968 TGAGCTAATGGGCC 203955 >seq17431 Length=5172618 Score = 111 bits (122), Expect = 8e-20 Identities = 78/89 (88%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | || |||||||||| |||||||||| |||||||||||||||||||||| Sbjct 2177559 AAAAAATTAGATCATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 2177500 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| ||| |||||||||||||||| Sbjct 2177499 ACGCTCTAGCCAGCTGAGCTAATGGGCCG 2177471 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 3931331 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 3931390 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 3931391 TGAGCTAATGGGCCG 3931405 >seq17437 Length=14172833 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| |||||||||| || |||||||||||||||||||||||||| |||| Sbjct 3709073 ATTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCA 3709132 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 3709133 GCTGAGCTAATGGGCC 3709148 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261435620045440