Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq17438 95.1 2e-14 >seq17438 Length=17193109 Score = 95.1 bits (104), Expect = 2e-14 Identities = 200/294 (68%), Gaps = 12/294 (4%) Strand=Plus/Plus Query 193881 GCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATG----GATTCCA 193936 || ||| |||| || | |||||| | | |||||||| ||| | || | | || | Sbjct 12182689 GCCAAGATGTACGGGTTTTGGATTGTGATCAATTATCGGGAGGCGTACGACATGTTTGCC 12182748 Query 193937 CGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAAC 193996 || | ||| || |||||||||||||| ||| || | || |||| ||||| || Sbjct 12182749 TGCAA----TGGCATACTCTTCAATCACGAGAGTCCGCGACGTGGCGAGAATTTTGTGAC 12182804 Query 193997 TCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACA--GAAGATTCTTTAT 194054 || ||||| || | | | | ||||||| ||| | || | | ||| ||| || | Sbjct 12182805 ACGCAAGATAACGCGATCTGTGGCTAAGAT-ACTGCTCAATCAAATGGAATATT-TTGAG 12182862 Query 194055 CTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATG 194114 || || ||| | | | ||| | |||||||| || || | |||||||| || || ||| Sbjct 12182863 CTGGGCAATTTGGACTCGAAGCGAGATTGGGGCCATGCCAGCGATTATGTGGAGGCTATG 12182922 Query 194115 TGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAA 194168 ||| | ||| |||||| |||||| || |||||||| ||||| || || ||| Sbjct 12182923 TGGATGATGCTGCAACGGGATGAGCCATCGGATTATGTCATTGCCACTGGGGAA 12182976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807379152966400