Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq17439 156 4e-33
seq4835 141 9e-29
seq17440 100 3e-16
>seq17439
Length=18325388
Score = 156 bits (172), Expect = 4e-33
Identities = 212/296 (72%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATAC 71737
||||| || |||||| | ||||||| ||||| || ||||| ||||| || ||||
Sbjct 5993649 GATGATCTTTGGAATTCGGCTCAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTT 5993708
Query 71738 CTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTC 71797
|| || ||||| |||||||||||||| ||||||||||| || || |||| ||| |
Sbjct 5993709 CTGCGAATGTATTGGGCCAAAAAGATACTCGAGTGGACGGCGACGCCGGAGCTGGCTTTG 5993768
Query 71798 GAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTAT 71857
||||||| || || ||||| | || || || || ||||||||||| || || |||
Sbjct 5993769 GAGTATTGCATACTGCTGAACGACAAGTATAGCCTGGATGGTCGCGATCCCAATGGCTAT 5993828
Query 71858 GTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGTCAAGTG 71917
|| || ||||||||| |||| | |||||||||||| ||| || ||| |
Sbjct 5993829 GTGGGCTGCATGTGGTCCATTGGTGGTCTTCACGATCAGGGCTGGAGGGAGCGTGCCATC 5993888
Query 71918 TTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAATGTGAA 71973
||||| ||||| |||| ||||| | | || ||| | || ||||| |||| ||
Sbjct 5993889 TTTGGCAAAATACGCTTCATGAACTATCAAGGCTGCAAGCGGAAGTTTGATGTTAA 5993944
>seq4835
Length=1216
Score = 141 bits (156), Expect = 9e-29
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATAC 71737
||||| || |||||| | || |||| ||||| || ||||| ||||| || ||||
Sbjct 265 GATGATCTTTGGAATTCGGCGCAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTT 206
Query 71738 CTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTC 71797
|| || ||||| |||||||||||||| ||||||||||| || || |||| ||| |
Sbjct 205 CTGCGAATGTATTGGGCCAAAAAGATACTCGAGTGGACGGCGACGCCGGAGCTGGCTTTG 146
Query 71798 GAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTAT 71857
||||||| || || ||||| | || || || || ||||| ||||| || || |||
Sbjct 145 GAGTATTGCATACTGCTGAACGACAAGTATAGCCTGGATGGTCGTGATCCCAATGGCTAT 86
Query 71858 GTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGAT 71893
|| || ||||||||| |||| | ||||||||||||
Sbjct 85 GTGGGCTGCATGTGGTCCATTGGTGGTCTTCACGAT 50
>seq17440
Length=24565398
Score = 100 bits (110), Expect = 3e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827
|||||| | || || |||||||| |||||||| | ||||| | || | ||| |
Sbjct 435536 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435477
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
||| || || ||| | || || |||||| ||||| || || || || || || ||
Sbjct 435476 CGATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCA 435417
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
||| | ||||| | || ||| ||||| | ||||||| | | | | | |||||||||
Sbjct 435416 ACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAA 435357
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
|||||| || || || ||| |||| |||| || | || || |||||||
Sbjct 435356 CATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGGGGAGGAA 435307
Score = 100 bits (110), Expect = 3e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827
|||||| | |||||||| ||||| ||||| || | ||||| | ||| | || | |
Sbjct 435764 AATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAG 435705
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
|||||| || || | ||||| || ||| ||||| || || || ||||| |||||
Sbjct 435704 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 435645
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
||| || | || | | || || || || || |||| | | | | | |||||||||
Sbjct 435644 ACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAA 435585
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
|||||| || || || ||| |||| |||| || | || ||||||||||
Sbjct 435584 CATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGAGGAGGAA 435535
Score = 100 bits (110), Expect = 3e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827
|||||| | || || |||||||| |||||||| | ||||| | || | ||| |
Sbjct 435992 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435933
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
||| || || ||| | || || |||||| ||||| || || || || || || ||
Sbjct 435932 CGATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCA 435873
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
||| | ||||| | || ||| ||||| | ||||||| | | | | | |||||||||
Sbjct 435872 ACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAA 435813
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
|||||| || || || ||| |||| |||| || | || || |||||||
Sbjct 435812 CATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGGGGAGGAA 435763
Score = 100 bits (110), Expect = 3e-16
Identities = 162/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824
||| ||||| | |||||||| ||||| ||||| || | ||||| | ||| | || |
Sbjct 436223 CAATATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCC 436164
Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884
| |||||| || || | ||||| || ||| ||||| || || || ||||| ||
Sbjct 436163 CAGCGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 436104
Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944
|||||| || | || | | || || || || || |||| | | | | | ||||||
Sbjct 436103 TCAACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTA 436044
Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
||||||||| || || || ||| |||| |||| || | || ||||||||||
Sbjct 436043 TAACATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGAGGAGGAA 435991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478558051596800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |