Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq17439 156 4e-33 seq4835 141 9e-29 seq17440 100 3e-16 >seq17439 Length=18325388 Score = 156 bits (172), Expect = 4e-33 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATAC 71737 ||||| || |||||| | ||||||| ||||| || ||||| ||||| || |||| Sbjct 5993649 GATGATCTTTGGAATTCGGCTCAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTT 5993708 Query 71738 CTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTC 71797 || || ||||| |||||||||||||| ||||||||||| || || |||| ||| | Sbjct 5993709 CTGCGAATGTATTGGGCCAAAAAGATACTCGAGTGGACGGCGACGCCGGAGCTGGCTTTG 5993768 Query 71798 GAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTAT 71857 ||||||| || || ||||| | || || || || ||||||||||| || || ||| Sbjct 5993769 GAGTATTGCATACTGCTGAACGACAAGTATAGCCTGGATGGTCGCGATCCCAATGGCTAT 5993828 Query 71858 GTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGTCAAGTG 71917 || || ||||||||| |||| | |||||||||||| ||| || ||| | Sbjct 5993829 GTGGGCTGCATGTGGTCCATTGGTGGTCTTCACGATCAGGGCTGGAGGGAGCGTGCCATC 5993888 Query 71918 TTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAATGTGAA 71973 ||||| ||||| |||| ||||| | | || ||| | || ||||| |||| || Sbjct 5993889 TTTGGCAAAATACGCTTCATGAACTATCAAGGCTGCAAGCGGAAGTTTGATGTTAA 5993944 >seq4835 Length=1216 Score = 141 bits (156), Expect = 9e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATAC 71737 ||||| || |||||| | || |||| ||||| || ||||| ||||| || |||| Sbjct 265 GATGATCTTTGGAATTCGGCGCAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTT 206 Query 71738 CTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTC 71797 || || ||||| |||||||||||||| ||||||||||| || || |||| ||| | Sbjct 205 CTGCGAATGTATTGGGCCAAAAAGATACTCGAGTGGACGGCGACGCCGGAGCTGGCTTTG 146 Query 71798 GAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTAT 71857 ||||||| || || ||||| | || || || || ||||| ||||| || || ||| Sbjct 145 GAGTATTGCATACTGCTGAACGACAAGTATAGCCTGGATGGTCGTGATCCCAATGGCTAT 86 Query 71858 GTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGAT 71893 || || ||||||||| |||| | |||||||||||| Sbjct 85 GTGGGCTGCATGTGGTCCATTGGTGGTCTTCACGAT 50 >seq17440 Length=24565398 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || |||||||| |||||||| | ||||| | || | ||| | Sbjct 435536 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435477 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| || || ||| | || || |||||| ||||| || || || || || || || Sbjct 435476 CGATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCA 435417 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| | ||||| | || ||| ||||| | ||||||| | | | | | ||||||||| Sbjct 435416 ACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAA 435357 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||| || || || ||| |||| |||| || | || || ||||||| Sbjct 435356 CATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGGGGAGGAA 435307 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | |||||||| ||||| ||||| || | ||||| | ||| | || | | Sbjct 435764 AATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAG 435705 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| || || | ||||| || ||| ||||| || || || ||||| ||||| Sbjct 435704 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 435645 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| || | || | | || || || || || |||| | | | | | ||||||||| Sbjct 435644 ACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAA 435585 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||| || || || ||| |||| |||| || | || |||||||||| Sbjct 435584 CATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGAGGAGGAA 435535 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || |||||||| |||||||| | ||||| | || | ||| | Sbjct 435992 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435933 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| || || ||| | || || |||||| ||||| || || || || || || || Sbjct 435932 CGATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCA 435873 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| | ||||| | || ||| ||||| | ||||||| | | | | | ||||||||| Sbjct 435872 ACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAA 435813 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||| || || || ||| |||| |||| || | || || ||||||| Sbjct 435812 CATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGGGGAGGAA 435763 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | |||||||| ||||| ||||| || | ||||| | ||| | || | Sbjct 436223 CAATATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCC 436164 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | |||||| || || | ||||| || ||| ||||| || || || ||||| || Sbjct 436163 CAGCGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 436104 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 |||||| || | || | | || || || || || |||| | | | | | |||||| Sbjct 436103 TCAACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTA 436044 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| || || || ||| |||| |||| || | || |||||||||| Sbjct 436043 TAACATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGAGGAGGAA 435991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478558051596800