Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq17434 253 5e-62 >seq17434 Length=8399593 Score = 253 bits (280), Expect = 5e-62 Identities = 1115/1739 (64%), Gaps = 57/1739 (3%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || || ||||| ||| | ||||| || | ||||| || ||| || ||| ||||| Sbjct 1624010 GAGCGTCCACAGCACATGCTGATGCGCGTCTCGATTGGGATACATGGCGATGATATTGAT 1623951 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA-TTCACGCACGCCACGCCAAC 363566 || || | || || ||||| || || || | ||| |||||||| || ||||||| Sbjct 1623950 GCTGCTGTGGAGACCTATAATCTGCTGTCTGAAAG-GTACTTCACGCATGCATCGCCAAC 1623892 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | | |||| || | ||| || ||||| || || || ||| ||| ||| Sbjct 1623891 ACTTTTTGCCGCTGCCACAAATCGTCCGCAAATGTCGTCGTGTTTCCTTTTAACCATGGT 1623832 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTT--AAGAATTGTGCTCTTATTTCCAAG 363684 |||||| || ||||| || ||| | | | | || ||| | || | || ||||| Sbjct 1623831 CTCCGATTCGATTGAGGGCAT-TTTCAAATCCGTCGAACAAT-GCGCCATGATCTCCAAA 1623774 Query 363685 AATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCG 363743 || || || || || | | || || | | ||||||| | || | ||| | Sbjct 1623773 GCCGCTGGTGGCATCGGGCTGAACGTTC-ATTGTATTCGTGCCAAAGGCACCTCGATTTG 1623715 Query 363744 CGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 ||||| || |||||||||||||| || ||||| ||||| || | ||| || Sbjct 1623714 TGGCACGAATGGCACTTCGAATGGGCTGGTGCCAATGCTGCGTGTATTCAATAATGTGGC 1623655 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 | || || || |||||||| || ||||| || || ||||| || ||| | ||||| Sbjct 1623654 ACGCTATGTGGATCAGGGTGGCGGTAAGCGACCGGGTGCATTTGCCATCTATTTGGAGCC 1623595 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 ||| | ||||| || || ||| | || | |||||||||||| |||||||| Sbjct 1623594 GTGGCATTCGGATATATTAGAATTTATGGATTTGAAGAAAAACACGGGCAAAGAGGAGCA 1623535 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 || |||||||| ||||| ||||| | ||| | |||| | |||||||| ||||| || Sbjct 1623534 TCGGGCACGTGAGCTGTTTTATGCCTTATGGATACCTGATCTGTTTATGAAACGCGTCGA 1623475 Query 363984 GGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATG 364043 || | || ||||||| || | |||||||| | ||||| || || ||||| || Sbjct 1623474 AGCCAATGAGGATTGGTCCCTGATGTGCCCACATAAGTGTCCCGGCCTCCAAGATGTTTG 1623415 Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGC---TCGTAA 364100 ||| ||||| | || || |||| | || || ||||| || || ||| | Sbjct 1623414 GGGCGACGATTTTGAGAAACTGTACGTTCAATACGAGAAAGAGGGCAAAGCGAATCG--A 1623357 Query 364101 GACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAAC 364160 | |||| || || | || |||||||||||||| || | ||| | ||||| || || Sbjct 1623356 G-TAATTAAAGCTCAAACACTTTGGTTTGCCATCATTGAAGCACAGGTGGAGACTGGCAC 1623298 Query 364161 ACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTAC 364220 ||| || ||| ||| ||| || || |||||||||||| ||| ||||| | | || || Sbjct 1623297 ACCTTACATGCTGTTCAAGGACTCATGCAACCGCAAGAGCAATCAGCAAAATGTGGGCAC 1623238 Query 364221 AATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGC 364280 || | || || ||||| || || ||| | || || | || ||||| || | ||| Sbjct 1623237 CATCAAATGCAGTAATCTATGCACTGAAATTGTCGAGTATTCGGCACCCGATGAAATTGC 1623178 Query 364281 CGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA---AAGATGGTACTTTTGA 364337 ||| || || | || ||||| || | |||||| | || || | || Sbjct 1623177 CGTGTGCAATTTAGCATCGATTGCATTGAACATGTTTGTGACGTCCGACAAAACGTACGA 1623118 Query 364338 CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGA 364397 | | || | || | || || ||| | | || ||| | | || | || || Sbjct 1623117 CTTCAAGAAACTGAAAGAAGTCACCAAAACAGTAACCAAGAATTTGAATAAAATAATTGA 1623058 Query 364398 CAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGG 364457 || || || ||||| |||| || || || || ||| | || ||||| || ||||| Sbjct 1623057 CATCAACTACTATCCGCTTCCGGAGGCAAAGAAATCCAATTTTCGCCATCGACCCATTGG 1622998 Query 364458 TCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCAT-TTGATTCGC 364516 | ||||||| || || |||| || | | |||| || || | ||| | || | Sbjct 1622997 TATTGGTGTGCAAGGATTCGCGGATGCAT---TGATTCT-AATGCGTCATCCTTATGAGA 1622942 Query 364517 CTGA------CGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570 || ||| | || ||||| | | ||||||||||| || ||||||| |||| Sbjct 1622941 GCGAAGAGGCCGCAC---TTTTAAATCAACAAATCTTTGAAACCATCTATTTTGGCGCAC 1622885 Query 364571 TGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTAT-GAGG-GGTC 364628 || || || || ||||| ||| | ||| || || ||| ||| ||| Sbjct 1622884 TGGAAGCCAGCTGCGAATTGGCCCAAAAGGAAGGACCCTATGAAACCTATCCAGGAAGTC 1622825 Query 364629 CCCTCTTTCGC-AGGGAAAATTCCAGTTTGATCTAT--GGAATGTCAC---GCCATCTGT 364682 | || || |||| | || |||| ||| | | || | | ||| | |||| | Sbjct 1622824 C---AGTTAGCAAGGGTATCTTACAGTACGATATGTGGGGCAAGACACCAACCGATCTCT 1622768 Query 364683 CCGA-TGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCC 364741 || ||||||| | || ||| || | | ||| |||||||| ||||| || | Sbjct 1622767 GGGACTGGAACTCGCTTAAGCT---GTCGA---TCAAGGAGCATGGTGTGCGCAATTCTC 1622714 Query 364742 TCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCT 364801 | || ||||||||||| || || ||||| || || || | || || || || | | Sbjct 1622713 TGCTTGTTGCGCCCATGCCAACCGCATCTACGGCTCAAATAATGGGCAATAATGAATCGT 1622654 Query 364802 TCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAG 364861 | || |||| ||| || | || | || || || || ||||| || || | ||| | Sbjct 1622653 TTGAGCCGTATACCTCAAACATCTACACCCGACGCGTGCTGTCCGGTGAGTTCCAGGTGG 1622594 Query 364862 TTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGA 364921 | ||| | | | | ||| | | || | | |||||| ||| ||||||| Sbjct 1622593 TGAATCATCATTTGTTGCGTGATTTAACGGAGCTGGACTTGTGGGATGATGATATGAAGA 1622534 Query 364922 ACTATATCATCGCCGCTAATGGTTCTGTGCAGAACAT----TCCAGGATTTCCAGAAGAT 364977 | | || |||||| | || || | || ||||| |||| | ||| || || Sbjct 1622533 ATCAAATAATCGCCAGTCGAGGATCAATACAAAACATCGAATCCA----TACCAAAAAAT 1622478 Query 364978 CTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCG 365037 ||| | | | || || ||||| |||||||| ||| || ||| || | ||||| Sbjct 1622477 GTGAGGGATCTGTATAAGACCGTGTGGGAAATATCCGTGAAAACAACGATCAAAATGGCA 1622418 Query 365038 GCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCA 365097 ||||||||||| || || || ||| || |||||||| ||| || || || |||| Sbjct 1622417 GCCGATCGCGGGGCATTCATTGATCAAAGTCAGTCGTTCAACATACATGTGGCTGAGCCC 1622358 Query 365098 ACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | || | ||| || ||||| || ||||| ||| ||||||| ||||||||||||| || Sbjct 1622357 AACTATGGCAAACTGACATCGATCCATTTTTACTCGTGGAAAGCCGGTCTTAAGACGGG 1622299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303062365638080