Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq17440 95.1 1e-14 >seq17440 Length=24565398 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | |||||||| ||||| ||||| || | || || | ||||| ||| | Sbjct 436223 CAATATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCC 436164 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||| || || | ||||| || ||| ||||| || || || ||||| || Sbjct 436163 CAGCGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 436104 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||||||| || |||| | | || ||||| || || |||| | | | | ||| || Sbjct 436103 TCAACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTA 436044 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||| || || || || | || || || | | | ||||||||| Sbjct 436043 TAACATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGAGGAGGA 435992 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | |||||||| ||||| ||||| || | || || | ||||| ||| ||| Sbjct 435764 AATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAG 435705 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| || || | ||||| || ||| ||||| || || || ||||| ||||| Sbjct 435704 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 435645 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| || |||| | | || ||||| || || |||| | | | | ||| ||||| Sbjct 435644 ACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAA 435585 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||| || || || || | || || || | | | ||||||||| Sbjct 435584 CATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGAGGAGGA 435536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429844617103200