Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq17438 93.3 3e-14 seq17440 82.4 6e-11 >seq17438 Length=17193109 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||||| |||||||| || ||||||||||||| || ||| |||||| Sbjct 16961296 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGT----GCGTCC 16961351 Query 16784 ----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||| || ||||| ||| | || | ||||| || || || | ||||| || Sbjct 16961352 ATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTT 16961411 Query 16840 GTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGAT 16899 ||| ||| | ||| || | | | ||||| ||||||| |||| |||||| Sbjct 16961412 GTCCTGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCACCTCCAAGGTGAT 16961471 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| || ||||| || || || ||||| || |||||| Sbjct 16961472 GGTCTTCCCGGTGAGTGTCTTCACAAAGATTTGCATT 16961508 >seq17440 Length=24565398 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||| ||||||| || ||| | || Sbjct 435324 AGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCT 435383 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| ||||| || || | || || ||||||||||| || | ||||| ||||| Sbjct 435384 TCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCT 435443 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | ||| ||| || || |||| |||||||| Sbjct 435444 TGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTC 435503 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| |||| ||||| || || ||||||||| Sbjct 435504 TTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435536 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||| ||||||| || ||| | || Sbjct 435780 AGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCT 435839 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| ||||| || || | || || ||||||||||| || | ||||| ||||| Sbjct 435840 TCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCT 435899 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | ||| ||| || || |||| |||||||| Sbjct 435900 TGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTC 435959 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| |||| ||||| || || ||||||||| Sbjct 435960 TTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405001898545600