Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq17434 428 6e-115 seq17439 257 2e-63 >seq17434 Length=8399593 Score = 428 bits (474), Expect = 6e-115 Identities = 1222/1866 (65%), Gaps = 38/1866 (2%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||| || |||| | | || || ||||| || ||||| ||||||||||| || ||| Sbjct 1622251 GTGAACTGTATGGCATTTGCAGCCGGCTTCGTGCGAAGATAATACATTCCCGTCTTAAGA 1622310 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 ||| |||| ||||||||| || || |||||| ||| | || || || | | Sbjct 1622311 CCGGCTTTCCACGAGTAAAAATGGATCGATGTCAGTTTGCCATAGTTGGGCTCAGCCACA 1622370 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || || || | || ||||||||||| ||||| || || | || || |||||||| || Sbjct 1622371 TGTATGTTGAACGACTGACTTTGATCAATGAATGCCCCGCGATCGGCTGCCATTTTGATC 1622430 Query 62030 ATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62088 | || ||| ||| |||||||| | || ||||| | | | | || || ||| | Sbjct 1622431 GTTGT-TTTCACGGATATTTCCCACACGGTCTTATACAGATCCCTCACATTTTTTGGTAT 1622489 Query 62089 G--TTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 | || | | || || || ||||| | | || || || |||||| || ||||||| Sbjct 1622490 GGATTCGATGTTTTGTATTGATCCTCGACTGGCGATTATTTGATTCTTCATATCATCATC 1622549 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 ||| || | ||| |||||| | | | | ||| |||| || || || || || || Sbjct 1622550 CCACAAGTCCAGCTCCGTTAAATCACGCAACAAATGATGATTCACCACCTGGAACTCACC 1622609 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265 |||| || | || ||||| || || ||||||||| || | || |||||||| || Sbjct 1622610 GGACAGCACGCGTCGGGTGTAGATGTTTGAGGTATACGGCTCAAACGATTCATTATTGCC 1622669 Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325 || |||||||| || ||||| || ||||| || || || | | | ||| | | ||| Sbjct 1622670 CATTATTTGAGCCGTAGATGCGGTTGGCATGGGCGCAACAAGCAGAGAATTGCGCACACC 1622729 Query 62326 GTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 62383 ||| || |||| || || | | ||| | ||| ||||| | ||| Sbjct 1622730 --ATGCTCCTTGATCGACAGCTTAAGCGAGTTCCAGTCCCAGAGATCGGTTGGTGTCTTG 1622787 Query 62384 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 62442 |||| ||||| || || | | || |||| ||| || || || Sbjct 1622788 CCCCACATATCGTACTGTAAGATACCCTTGCTAACTGGACT-TCCTGGATAGGTTTCATA 1622846 Query 62443 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62502 ||||||||||| | || | ||| || || || || | ||| || |||| |||||||| Sbjct 1622847 GGGTCCTTCCTTTTGGGCCAATTCGCAGCTGGCTTCCAGTGCGCCAAAATAGATGGTTTC 1622906 Query 62503 GAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 62562 ||||| | | ||||| | | || || ||| ||| | |||| | | ||||| Sbjct 1622907 AAAGATTTGTTGATTTAAAAGTGCGGCCTCTTCGCTCTCATAAGGATGACGCATTAGAAT 1622966 Query 62563 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62622 || || || || |||||||| ||||||||||| || |||| ||| | ||| || | Sbjct 1622967 CAATGCATCCGCGAATCCTTGCACACCAATACCAATGGGTCGATGGCGAAAATTGGATTT 1623026 Query 62623 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 62682 | || || |||| ||||| || || || || || |||||||| | ||| || | Sbjct 1623027 CTTTGCCTCCGGAAGCGGATAGTAGTTGATGTCAATTATTTTATTCAAATTCTTGGTTAC 1623086 Query 62683 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCCCATCTATTACAA 62735 | |||| || || |||||||| || || | ||| | || |||| Sbjct 1623087 TGTTTTGGTGACTTCTTTCAGTTTCTTGAAGTCGTACGTTTTGTCGGACGTC----ACAA 1623142 Query 62736 ACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 62795 ||||||||||||||| ||||| | ||| || ||||| | |||| | ||| ||| | Sbjct 1623143 ACATGTTCAATGCAATCGATGCTAAATTGCACACGGCAATTTCATCGGGTGCCGAATACT 1623202 Query 62796 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 62855 | || |||||||| |||||||| || |||||||| || | |||||| ||||| |||| Sbjct 1623203 CGACAATTTCAGTGCATAGATTACTGCATTTGATGGTGCCCACATTTTGCTGATTGCTCT 1623262 Query 62856 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 62915 | ||| || | ||||| | || ||| | || || ||||| || | ||| | ||| | Sbjct 1623263 TGCGGTTGCATGAGTCCTTGAACAGCATGTAAGGTGTGCCAGTCTCCACCTGTGCTTCAA 1623322 Query 62916 TAATCGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCTTTTCTCTTTCG 62974 | || || ||| | | |||| || |||| | |||| | || | ||||||| Sbjct 1623323 TGATGGCAAACCAAAGTGTTTGAGCTTTAATTACTCGATTCG---CTTTGCCCTCTTTCT 1623379 Query 62975 TATAGTGTA--TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATT 63032 || || | |||| | || || ||||| |||||||||| | || || ||||| | Sbjct 1623380 CGTATTGAACGTACAGTTTCTCAAAATCGTCGCCCCAAACATCTTGGAGGCCGGGACACT 1623439 Query 63033 CATCCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTCATAAAGAGAT 63089 || || ||||||| ||||| || |||| |||| || ||||||||||| |||| Sbjct 1623440 TATGTGGGCACATCAGGGACCAATCC---TCATTGGCTTCGACGCGTTTCATAAACAGAT 1623496 Query 63090 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63149 |||| ||||| | || ||| || || | | | ||| ||||| || || || || | Sbjct 1623497 CAGGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGCTCCTCTTTGCCCGTGTTTT 1623556 Query 63150 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63209 | || | ||| | || | | ||||| ||||||||||| ||||| || ||||| | Sbjct 1623557 TCTTCAAATCCATAAATTCTAATATATCCGAATGCCACGGCTCCAAATAGATGGCAAATG 1623616 Query 63210 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63269 | || || || || || |||||||| | || | || ||||| | || | || Sbjct 1623617 CACCCGGTCGCTTACCGCCACCCTGATCCACATAGCGTGCCACATTATTGAATACACGCA 1623676 Query 63270 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCAC 63329 |||||| | | ||||| || || ||||| || || | || || | || |||||| Sbjct 1623677 GCATTGGCACCAGCCCATTCGAAGTGCCATTCGTGCCACAAATCGAGGTGCCTTTGGCAC 1623736 Query 63330 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 63389 ||||| | || || || || || || || ||| ||||| | |||||| ||| Sbjct 1623737 GAATACAATGAACGTTCAGCCCGATGCCACCAGCGGCTTTGGAGATCATGGCGCATTGTT 1623796 Query 63390 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 63449 | | | | |||||||| || ||| | |||| | | || ||||| | Sbjct 1623797 CGACGGATTTGAAAATGCCCTCAATCGAATCGGAGACCATGGTTAAAAGGAAACACGACG 1623856 Query 63450 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATT 63509 ||||||| ||||| | || | || ||| | || || || || || || || | Sbjct 1623857 ACATTTGCGGACGATTTGTGGCAGCGGCAAAAAGTGTTGGCGATGCATGCGTGAAGTACC 1623916 Query 63510 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCC 63567 ||||||| || ||||| || ||||| | ||| | || |||| ||| | ||| || || Sbjct 1623917 TTTCAGACAGCAGATTATAGGTCTCCACAGCAGCATCAATAT--CATCGCCATGTATCCC 1623974 Query 63568 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63627 | | ||| ||||| | ||||||||| || | || | || |||| ||||| |||| Sbjct 1623975 AATCGAGACGCGCATCAGCATGTGCTGTGGACGCTCTGCTATTTTGTGATTTATCTTCAG 1624034 Query 63628 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63687 ||| || ||| || | || ||||| |||||||| || || |||||| || ||||| Sbjct 1624035 CAAATACGATCGCTCGAGCGTCTTAAATCCAAAATAATTATAGCCAAAGTCACGATCGTA 1624094 Query 63688 AATAAT 63693 || || Sbjct 1624095 GATGAT 1624100 >seq17439 Length=18325388 Score = 257 bits (284), Expect = 2e-63 Identities = 558/828 (67%), Gaps = 13/828 (2%) Strand=Plus/Plus Query 32373 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 32432 || ||||| ||||| || || |||||||| |||||||| || ||||| || ||||| Sbjct 9056302 TGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCC 9056361 Query 32433 ATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 32492 |||||| |||||||| | ||||| ||||| | || | || | ||| Sbjct 9056362 ATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAGCTCCACCAACAAG 9056421 Query 32493 CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 32552 | ||| || || || || |||||| ||||| |||||||||| || || || || Sbjct 9056422 CGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCAGATTT 9056481 Query 32553 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 32612 || || | ||| |||| ||||| || || ||||||| || || || | | ||| Sbjct 9056482 ACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAGAC----GAT 9056537 Query 32613 CTTACTGTTTC-TTCAC---TCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 32668 || | || | | ||||| | || | | || | || | ||||||| | || || Sbjct 9056538 CTCAATGATGCGTTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATCATAACCGCAAA 9056597 Query 32669 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 32728 ||||| || || ||||| || | || | ||||| || || || || |||||||| Sbjct 9056598 GTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCAT 9056657 Query 32729 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 32788 ||||||||||||||||||||| || ||||| ||||| || |||||| || ||||| Sbjct 9056658 TAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTTC 9056717 Query 32789 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-TATCCACTT 32845 || || || |||||||||| | ||| ||| | ||| || ||| ||||| Sbjct 9056718 GACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAAATCCAAGA 9056777 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 | ||||| || ||||| |||||| |||||||| || |||||||| |||||||| Sbjct 9056778 GAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTGAAGAGATA 9056837 Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965 | | || | |||| | ||| || || || | | ||| ||||| || || || Sbjct 9056838 ATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGAGTG 9056897 Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 | || || ||||| || ||||| || |||||||| | ||||| |||||||| ||||| Sbjct 9056898 TACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTTC 9056957 Query 33026 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33085 | ||| || || | | ||| || || || || || || ||| || || || || Sbjct 9056958 CTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAGC 9057017 Query 33086 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATAT 33144 ||| |||||| || |||| || | |||| || || ||| || | || | Sbjct 9057018 CAACACATGTGAAATGAAATGACGCTCATTGTCTGTTAAGCGTA-CCCAGTCCGTCATGT 9057076 Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 | || |||| |||||| || ||||| ||||| |||||||| || |||| Sbjct 9057077 CCTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGCCT 9057124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633493868224000