Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq17434 428 6e-115
seq17439 257 2e-63
>seq17434
Length=8399593
Score = 428 bits (474), Expect = 6e-115
Identities = 1222/1866 (65%), Gaps = 38/1866 (2%)
Strand=Plus/Plus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
||||| || |||| | | || || ||||| || ||||| ||||||||||| || |||
Sbjct 1622251 GTGAACTGTATGGCATTTGCAGCCGGCTTCGTGCGAAGATAATACATTCCCGTCTTAAGA 1622310
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969
||| |||| ||||||||| || || |||||| ||| | || || || | |
Sbjct 1622311 CCGGCTTTCCACGAGTAAAAATGGATCGATGTCAGTTTGCCATAGTTGGGCTCAGCCACA 1622370
Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029
|| || || | || ||||||||||| ||||| || || | || || |||||||| ||
Sbjct 1622371 TGTATGTTGAACGACTGACTTTGATCAATGAATGCCCCGCGATCGGCTGCCATTTTGATC 1622430
Query 62030 ATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62088
| || ||| ||| |||||||| | || ||||| | | | | || || ||| |
Sbjct 1622431 GTTGT-TTTCACGGATATTTCCCACACGGTCTTATACAGATCCCTCACATTTTTTGGTAT 1622489
Query 62089 G--TTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145
| || | | || || || ||||| | | || || || |||||| || |||||||
Sbjct 1622490 GGATTCGATGTTTTGTATTGATCCTCGACTGGCGATTATTTGATTCTTCATATCATCATC 1622549
Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205
||| || | ||| |||||| | | | | ||| |||| || || || || || ||
Sbjct 1622550 CCACAAGTCCAGCTCCGTTAAATCACGCAACAAATGATGATTCACCACCTGGAACTCACC 1622609
Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265
|||| || | || ||||| || || ||||||||| || | || |||||||| ||
Sbjct 1622610 GGACAGCACGCGTCGGGTGTAGATGTTTGAGGTATACGGCTCAAACGATTCATTATTGCC 1622669
Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325
|| |||||||| || ||||| || ||||| || || || | | | ||| | | |||
Sbjct 1622670 CATTATTTGAGCCGTAGATGCGGTTGGCATGGGCGCAACAAGCAGAGAATTGCGCACACC 1622729
Query 62326 GTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 62383
||| || |||| || || | | ||| | ||| ||||| | |||
Sbjct 1622730 --ATGCTCCTTGATCGACAGCTTAAGCGAGTTCCAGTCCCAGAGATCGGTTGGTGTCTTG 1622787
Query 62384 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 62442
|||| ||||| || || | | || |||| ||| || || ||
Sbjct 1622788 CCCCACATATCGTACTGTAAGATACCCTTGCTAACTGGACT-TCCTGGATAGGTTTCATA 1622846
Query 62443 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62502
||||||||||| | || | ||| || || || || | ||| || |||| ||||||||
Sbjct 1622847 GGGTCCTTCCTTTTGGGCCAATTCGCAGCTGGCTTCCAGTGCGCCAAAATAGATGGTTTC 1622906
Query 62503 GAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 62562
||||| | | ||||| | | || || ||| ||| | |||| | | |||||
Sbjct 1622907 AAAGATTTGTTGATTTAAAAGTGCGGCCTCTTCGCTCTCATAAGGATGACGCATTAGAAT 1622966
Query 62563 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62622
|| || || || |||||||| ||||||||||| || |||| ||| | ||| || |
Sbjct 1622967 CAATGCATCCGCGAATCCTTGCACACCAATACCAATGGGTCGATGGCGAAAATTGGATTT 1623026
Query 62623 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 62682
| || || |||| ||||| || || || || || |||||||| | ||| || |
Sbjct 1623027 CTTTGCCTCCGGAAGCGGATAGTAGTTGATGTCAATTATTTTATTCAAATTCTTGGTTAC 1623086
Query 62683 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCCCATCTATTACAA 62735
| |||| || || |||||||| || || | ||| | || ||||
Sbjct 1623087 TGTTTTGGTGACTTCTTTCAGTTTCTTGAAGTCGTACGTTTTGTCGGACGTC----ACAA 1623142
Query 62736 ACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 62795
||||||||||||||| ||||| | ||| || ||||| | |||| | ||| ||| |
Sbjct 1623143 ACATGTTCAATGCAATCGATGCTAAATTGCACACGGCAATTTCATCGGGTGCCGAATACT 1623202
Query 62796 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 62855
| || |||||||| |||||||| || |||||||| || | |||||| ||||| ||||
Sbjct 1623203 CGACAATTTCAGTGCATAGATTACTGCATTTGATGGTGCCCACATTTTGCTGATTGCTCT 1623262
Query 62856 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 62915
| ||| || | ||||| | || ||| | || || ||||| || | ||| | ||| |
Sbjct 1623263 TGCGGTTGCATGAGTCCTTGAACAGCATGTAAGGTGTGCCAGTCTCCACCTGTGCTTCAA 1623322
Query 62916 TAATCGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCTTTTCTCTTTCG 62974
| || || ||| | | |||| || |||| | |||| | || | |||||||
Sbjct 1623323 TGATGGCAAACCAAAGTGTTTGAGCTTTAATTACTCGATTCG---CTTTGCCCTCTTTCT 1623379
Query 62975 TATAGTGTA--TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATT 63032
|| || | |||| | || || ||||| |||||||||| | || || ||||| |
Sbjct 1623380 CGTATTGAACGTACAGTTTCTCAAAATCGTCGCCCCAAACATCTTGGAGGCCGGGACACT 1623439
Query 63033 CATCCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTCATAAAGAGAT 63089
|| || ||||||| ||||| || |||| |||| || ||||||||||| ||||
Sbjct 1623440 TATGTGGGCACATCAGGGACCAATCC---TCATTGGCTTCGACGCGTTTCATAAACAGAT 1623496
Query 63090 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63149
|||| ||||| | || ||| || || | | | ||| ||||| || || || || |
Sbjct 1623497 CAGGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGCTCCTCTTTGCCCGTGTTTT 1623556
Query 63150 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63209
| || | ||| | || | | ||||| ||||||||||| ||||| || ||||| |
Sbjct 1623557 TCTTCAAATCCATAAATTCTAATATATCCGAATGCCACGGCTCCAAATAGATGGCAAATG 1623616
Query 63210 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63269
| || || || || || |||||||| | || | || ||||| | || | ||
Sbjct 1623617 CACCCGGTCGCTTACCGCCACCCTGATCCACATAGCGTGCCACATTATTGAATACACGCA 1623676
Query 63270 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCAC 63329
|||||| | | ||||| || || ||||| || || | || || | || ||||||
Sbjct 1623677 GCATTGGCACCAGCCCATTCGAAGTGCCATTCGTGCCACAAATCGAGGTGCCTTTGGCAC 1623736
Query 63330 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 63389
||||| | || || || || || || || ||| ||||| | |||||| |||
Sbjct 1623737 GAATACAATGAACGTTCAGCCCGATGCCACCAGCGGCTTTGGAGATCATGGCGCATTGTT 1623796
Query 63390 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 63449
| | | | |||||||| || ||| | |||| | | || ||||| |
Sbjct 1623797 CGACGGATTTGAAAATGCCCTCAATCGAATCGGAGACCATGGTTAAAAGGAAACACGACG 1623856
Query 63450 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATT 63509
||||||| ||||| | || | || ||| | || || || || || || || |
Sbjct 1623857 ACATTTGCGGACGATTTGTGGCAGCGGCAAAAAGTGTTGGCGATGCATGCGTGAAGTACC 1623916
Query 63510 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCC 63567
||||||| || ||||| || ||||| | ||| | || |||| ||| | ||| || ||
Sbjct 1623917 TTTCAGACAGCAGATTATAGGTCTCCACAGCAGCATCAATAT--CATCGCCATGTATCCC 1623974
Query 63568 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63627
| | ||| ||||| | ||||||||| || | || | || |||| ||||| ||||
Sbjct 1623975 AATCGAGACGCGCATCAGCATGTGCTGTGGACGCTCTGCTATTTTGTGATTTATCTTCAG 1624034
Query 63628 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63687
||| || ||| || | || ||||| |||||||| || || |||||| || |||||
Sbjct 1624035 CAAATACGATCGCTCGAGCGTCTTAAATCCAAAATAATTATAGCCAAAGTCACGATCGTA 1624094
Query 63688 AATAAT 63693
|| ||
Sbjct 1624095 GATGAT 1624100
>seq17439
Length=18325388
Score = 257 bits (284), Expect = 2e-63
Identities = 558/828 (67%), Gaps = 13/828 (2%)
Strand=Plus/Plus
Query 32373 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 32432
|| ||||| ||||| || || |||||||| |||||||| || ||||| || |||||
Sbjct 9056302 TGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCC 9056361
Query 32433 ATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 32492
|||||| |||||||| | ||||| ||||| | || | || | |||
Sbjct 9056362 ATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAGCTCCACCAACAAG 9056421
Query 32493 CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 32552
| ||| || || || || |||||| ||||| |||||||||| || || || ||
Sbjct 9056422 CGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCAGATTT 9056481
Query 32553 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 32612
|| || | ||| |||| ||||| || || ||||||| || || || | | |||
Sbjct 9056482 ACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAGAC----GAT 9056537
Query 32613 CTTACTGTTTC-TTCAC---TCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 32668
|| | || | | ||||| | || | | || | || | ||||||| | || ||
Sbjct 9056538 CTCAATGATGCGTTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATCATAACCGCAAA 9056597
Query 32669 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 32728
||||| || || ||||| || | || | ||||| || || || || ||||||||
Sbjct 9056598 GTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCAT 9056657
Query 32729 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 32788
||||||||||||||||||||| || ||||| ||||| || |||||| || |||||
Sbjct 9056658 TAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTTC 9056717
Query 32789 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-TATCCACTT 32845
|| || || |||||||||| | ||| ||| | ||| || ||| |||||
Sbjct 9056718 GACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAAATCCAAGA 9056777
Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905
| ||||| || ||||| |||||| |||||||| || |||||||| ||||||||
Sbjct 9056778 GAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTGAAGAGATA 9056837
Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965
| | || | |||| | ||| || || || | | ||| ||||| || || ||
Sbjct 9056838 ATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGAGTG 9056897
Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025
| || || ||||| || ||||| || |||||||| | ||||| |||||||| |||||
Sbjct 9056898 TACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTTC 9056957
Query 33026 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33085
| ||| || || | | ||| || || || || || || ||| || || || ||
Sbjct 9056958 CTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAGC 9057017
Query 33086 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATAT 33144
||| |||||| || |||| || | |||| || || ||| || | || |
Sbjct 9057018 CAACACATGTGAAATGAAATGACGCTCATTGTCTGTTAAGCGTA-CCCAGTCCGTCATGT 9057076
Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192
| || |||| |||||| || ||||| ||||| |||||||| || ||||
Sbjct 9057077 CCTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGCCT 9057124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633493868224000
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