Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq17439 129 5e-25 seq17438 122 8e-23 seq17436 122 8e-23 seq17440 114 1e-20 seq17434 114 1e-20 >seq17439 Length=18325388 Score = 129 bits (142), Expect = 5e-25 Identities = 207/293 (71%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 50988 AAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTC 51047 |||||| ||||| ||||| |||||||| | | ||| ||||||| || || || Sbjct 5993936 AAACTTCCGCTTGCAGCCTTGATAGTTCATGAAGCGTATTTTGCCAAAGATGGCACGCTC 5993877 Query 51048 TTTGAACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAG 51106 | | | |||| ||||| | ||| | ||| |||||||| || |||||||| || | Sbjct 5993876 CCTCCA-GCCCTGATCGTGAAGACCACCAATGGACCACATGCAGCCCACATAGCCATTGG 5993818 Query 51107 GATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGT 51166 ||||||||||||||| ||| || | ||||| || | |||| ||| |||| |||| | Sbjct 5993817 GATCGCGACCATCCAGGCTATACTTGTCGTTCAGCAGTATGCAATACTCCAAAGCCAGCT 5993758 Query 51167 CTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCA 51226 | | | | |||||| || | || || |||||||| ||||| |||| | || |||| Sbjct 5993757 CCGGCGTCGCCGTCCACTCGAGTATCTTTTTGGCCCAATACATTCGCAGAAATCCATGCA 5993698 Query 51227 TCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 | |||||||| || | |||||| |||||||| ||||| | || |||| Sbjct 5993697 TTTTGCCCTCCTTCACC--AGCTGCAGCTGAGCCGAATTCCAAAGATCATCGT 5993647 >seq17438 Length=17193109 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| ||||| ||||| | ||||| || ||||||| | || |||||| | Sbjct 16961510 ACAATGCAAATCTTTGTGAAGACACTCACCGGGAAGACCATCACCTTGGAGGTGGAGCCC 16961451 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| |||||| | ||| | || | ||| ||||| || || ||||| || || Sbjct 16961450 TCGGACACCATCGAGAATGTTAAGGCCAAGATTCAG-GACAAGGAGGGAATTCCCCCAGA 16961392 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || ||||||||||| || | ||||||| ||||| || ||| || Sbjct 16961391 TCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTA 16961332 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || ||||| || || ||||| Sbjct 16961331 CAACATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 16961296 >seq17436 Length=11997470 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24981 TTTGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACA 25040 |||||| || |||| ||||| || || || ||||||||||| || || ||||||| Sbjct 6691922 TTTGTAGGAACAGGAAATATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACC 6691981 Query 25041 GTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAA 25100 | || |||||| | || || || || ||| ||||| || ||| ||||| || Sbjct 6691982 TTGGAGGTGGAGCCTTCCGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAG 6692041 Query 25101 GGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGC 25160 || ||||| || || || ||||| | || ||||||||||| || | ||||||| ||| Sbjct 6692042 GGCATTCCCCCAGATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGC 6692101 Query 25161 ACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| | |||||||| || || || || ||||| ||||| || ||||| Sbjct 6692102 ACTCTTTCTGATTACAACATCCAGAAGGAGTCCACTCTACACTTGGTGCT 6692151 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| | || |||||| | || Sbjct 6692168 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692227 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| ||||| || ||| ||||| || || ||||| || || || Sbjct 6692228 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6692287 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 6692288 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6692347 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| ||||| || || || ||||| Sbjct 6692348 ATCCAGAAAGAGTCCACTCTCCACTTGGTGCT 6692379 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| | || |||||| | || Sbjct 6692396 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692455 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| ||||| || ||| ||||| || || ||||| || || || Sbjct 6692456 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6692515 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | ||||||| |||||| | ||||||||| Sbjct 6692516 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAT 6692575 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || ||||| Sbjct 6692576 ATCCAGAAGGAGTCCACTCTCCACTTGGTGCT 6692607 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| | || |||||| | || Sbjct 6692852 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692911 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| ||||| || ||| ||||| || || ||||| || || || Sbjct 6692912 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6692971 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 6692972 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6693031 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || ||||| Sbjct 6693032 ATCCAGAAGGAGTCCACTCTCCACTTGGTGCT 6693063 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| | || |||||| | ||| Sbjct 6693308 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 6693367 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| ||||| || ||| ||||| || || ||||| || || || Sbjct 6693368 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6693427 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | ||||||| |||||| | |||||||| Sbjct 6693428 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6693487 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || ||||| Sbjct 6693488 ATCCAGAAGGAGTCCACTCTCCACTTGGTGCT 6693519 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| | || |||||| | ||| Sbjct 6693536 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 6693595 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| ||||| || ||| ||||| || || ||||| || || || Sbjct 6693596 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6693655 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | ||||||| |||||| | |||||||| Sbjct 6693656 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6693715 Query 25179 ATTCAAAAAGAATCC 25193 || || || || ||| Sbjct 6693716 ATCCAGAAGGAGTCC 6693730 >seq17440 Length=24565398 Score = 114 bits (126), Expect = 1e-20 Identities = 167/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||||||||| ||||| || || ||||||| | ||||||||| | Sbjct 435764 AATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAG 435705 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||||| || |||| | || |||| ||| ||||| || || ||||| || | Sbjct 435704 CGACACTATTGAAAATGTCA---AGGCTAAAATTCA-GGACAAGGAGGGAATTCCTCCAG 435649 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | |||||||| | || ||||| || || || | || |||| ||| || || ||| | Sbjct 435648 ATCAACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACT 435589 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || ||||| || || || || || || || || || | || |||||||||| Sbjct 435588 ATAACATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGAGGAGGAA 435535 Score = 113 bits (124), Expect = 4e-20 Identities = 166/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| ||||| || || ||||||| | ||||||||| | Sbjct 436219 ATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAGC 436160 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| | || |||| ||| ||||| || || ||||| || || Sbjct 436159 GACACTATTGAAAATGTCA---AGGCTAAAATTCA-GGACAAGGAGGGAATTCCTCCAGA 436104 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || ||||| || || || | || |||| ||| || || ||| || Sbjct 436103 TCAACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTA 436044 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| || || || || || || || || || | || |||||||||| Sbjct 436043 TAACATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGAGGAGGAA 435991 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || ||||| || || ||||||| | || || || | || Sbjct 435536 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435477 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| ||| | ||| | || | ||| ||||| || || || || || |||| Sbjct 435476 CGATACTATTGAGAACGTTAAGGCCAAGATTCAA-GACAAGGAGGGAATCCCCCCAGACC 435418 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || || ||||| ||||| || ||||||| |||||| || ||| || | Sbjct 435417 AACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATA 435358 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | ||||| || || || || || || || || || | || || ||||||| Sbjct 435357 ACATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGGGGAGGAA 435307 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || ||||| || || ||||||| | || || || | || Sbjct 435992 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435933 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| ||| | ||| | || | ||| ||||| || || || || || |||| Sbjct 435932 CGATACTATTGAGAACGTTAAGGCCAAGATTCAA-GACAAGGAGGGAATCCCCCCAGACC 435874 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || || ||||| ||||| || ||||||| |||||| || ||| || | Sbjct 435873 AACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATA 435814 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | ||||| || || || || || || || || || | || || ||||||| Sbjct 435813 ACATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGGGGAGGAA 435763 >seq17434 Length=8399593 Score = 114 bits (126), Expect = 1e-20 Identities = 158/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| || || || || | || ||||| ||||||| | || || || || Sbjct 1557938 ACGATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCG 1557997 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 || || || ||||| |||| |||| || | || ||||||||||| ||||| || Sbjct 1557998 TCGGATACCATCGAAAATGTCA---AAGCCAAGATCCAG-GACAAAGAAGGAATTCCTCC 1558053 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || ||||| | || ||||| ||||| ||||| ||||||| ||||||| | || Sbjct 1558054 AGATCAGCAGCGTTTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCTGA 1558113 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||| ||||| || || | || || ||||| Sbjct 1558114 TTACAACATTCAGAAAGAGTCAACATTGCACTTGGTGCT 1558152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433235896133600