Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq17439 260 2e-64
seq17429 116 4e-21
seq17438 104 3e-17
>seq17439
Length=18325388
Score = 260 bits (288), Expect = 2e-64
Identities = 605/896 (68%), Gaps = 27/896 (3%)
Strand=Plus/Plus
Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801
||||||||||||||| ||||||||||| ||||| | |||| | || | || || ||
Sbjct 9056241 TTAGAAATCTGCATCGAGTGTAAATACGTTGTCCAACCGATT-TGATG--TCACGCC-CA 9056296
Query 92802 TTTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860
| || ||||| || ||||| || ||||| ||||| || || || ||||| || |||
Sbjct 9056297 TGCGCTGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATC- 9056355
Query 92861 AATTCACT---AGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATC---AACTCG 92914
| ||| | ||| | ||||||||| | |||||| || ||| ||||| | |||
Sbjct 9056356 ATTTCCATGAAAGTAAATGGATTCTTTGTGTTATA-TATTTT--ACCGACACCGAGCTCC 9056412
Query 92915 TACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCT 92974
||| || | ||| || || || || || || | ||||||| |||||||||| ||
Sbjct 9056413 ACCAACAAGCGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCA 9056472
Query 92975 AGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTC 93034
| ||| |||||| | |||||| || | || || | ||| || || || ||
Sbjct 9056473 ATCAGATTTACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAG 9056532
Query 93035 AAGATTTCTATTACTCT---ACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAG 93091
| ||| || || | | || | || | | | || | | | | |||| |
Sbjct 9056533 ACGATCTCAATGATGCGTTCACGGCTGGGACGCT---GCACCAGGTGCTGGAACATCATA 9056589
Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151
|||||||||| ||| | || || || || || || | ||| || ||| || | |
Sbjct 9056590 ACCGCAAAGTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGA 9056649
Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211
|| || | || || || || || ||||| || || || |||||||| || ||| ||
Sbjct 9056650 CCGGGCATTAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAG 9056709
Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271
|| ||||| ||||| || || || | ||| || || |||| || || | || | ||
Sbjct 9056710 ATGCCTTCGACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTG--GATG 9056767
Query 93272 A--TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329
| |||| | ||||| || || || ||| | | || | |||||| ||||| |
Sbjct 9056768 AAATCCAAGAGAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCAT 9056827
Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389
| || || ||||| |||| | | |||||| || || || ||||||| || | ||||
Sbjct 9056828 TGAAGAGATAATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACA 9056887
Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449
| || || || ||||||||||| ||||| || || || ||||| || | || || || |
Sbjct 9056888 TCTCTGAGTGTACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAA 9056947
Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509
|||||||||| || ||| | ||| || ||||| || || || || |||||||| || |
Sbjct 9056948 TCTGCACTTCCTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGG 9057007
Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT-TTAAGCTTATCCCAA 93568
| || |||||||| | ||| || ||||| ||||| ||| |||||| || ||||
Sbjct 9057008 CGAAGAAAGCCAACACATGTGAAATGAAATGACGCTCATTGTCTGTTAAGCGTA-CCCAG 9057066
Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
|| | | || || || ||||| || || || |||||||| || |||||||| ||
Sbjct 9057067 TCCGTCATGTCCTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGC 9057122
>seq17429
Length=4233967
Score = 116 bits (128), Expect = 4e-21
Identities = 78/86 (91%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||
Sbjct 749679 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 749738
Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348
||||||||||||||||||||||||||
Sbjct 749739 GTGGGTTCGAACCCCACACCTGACAA 749764
>seq17438
Length=17193109
Score = 104 bits (114), Expect = 3e-17
Identities = 77/89 (87%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||| ||||| |||| ||| | | ||||
Sbjct 1354023 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGCTCTGTTTCTCGAAAGAGAGC 1353964
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351
||||||||||| |||||||||||||| ||
Sbjct 1353963 GTGGGTTCGAATCCCACACCTGACAAGTT 1353935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556739404345600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |