Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq17439 260 2e-64 seq17429 116 4e-21 seq17438 104 3e-17 >seq17439 Length=18325388 Score = 260 bits (288), Expect = 2e-64 Identities = 605/896 (68%), Gaps = 27/896 (3%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||||||||||||||| ||||||||||| ||||| | |||| | || | || || || Sbjct 9056241 TTAGAAATCTGCATCGAGTGTAAATACGTTGTCCAACCGATT-TGATG--TCACGCC-CA 9056296 Query 92802 TTTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860 | || ||||| || ||||| || ||||| ||||| || || || ||||| || ||| Sbjct 9056297 TGCGCTGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATC- 9056355 Query 92861 AATTCACT---AGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATC---AACTCG 92914 | ||| | ||| | ||||||||| | |||||| || ||| ||||| | ||| Sbjct 9056356 ATTTCCATGAAAGTAAATGGATTCTTTGTGTTATA-TATTTT--ACCGACACCGAGCTCC 9056412 Query 92915 TACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCT 92974 ||| || | ||| || || || || || || | ||||||| |||||||||| || Sbjct 9056413 ACCAACAAGCGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCA 9056472 Query 92975 AGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTC 93034 | ||| |||||| | |||||| || | || || | ||| || || || || Sbjct 9056473 ATCAGATTTACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAG 9056532 Query 93035 AAGATTTCTATTACTCT---ACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAG 93091 | ||| || || | | || | || | | | || | | | | |||| | Sbjct 9056533 ACGATCTCAATGATGCGTTCACGGCTGGGACGCT---GCACCAGGTGCTGGAACATCATA 9056589 Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 |||||||||| ||| | || || || || || || | ||| || ||| || | | Sbjct 9056590 ACCGCAAAGTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGA 9056649 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || || || || || ||||| || || || |||||||| || ||| || Sbjct 9056650 CCGGGCATTAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAG 9056709 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271 || ||||| ||||| || || || | ||| || || |||| || || | || | || Sbjct 9056710 ATGCCTTCGACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTG--GATG 9056767 Query 93272 A--TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 | |||| | ||||| || || || ||| | | || | |||||| ||||| | Sbjct 9056768 AAATCCAAGAGAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCAT 9056827 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 | || || ||||| |||| | | |||||| || || || ||||||| || | |||| Sbjct 9056828 TGAAGAGATAATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACA 9056887 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 | || || || ||||||||||| ||||| || || || ||||| || | || || || | Sbjct 9056888 TCTCTGAGTGTACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAA 9056947 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 |||||||||| || ||| | ||| || ||||| || || || || |||||||| || | Sbjct 9056948 TCTGCACTTCCTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGG 9057007 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT-TTAAGCTTATCCCAA 93568 | || |||||||| | ||| || ||||| ||||| ||| |||||| || |||| Sbjct 9057008 CGAAGAAAGCCAACACATGTGAAATGAAATGACGCTCATTGTCTGTTAAGCGTA-CCCAG 9057066 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || | | || || || ||||| || || || |||||||| || |||||||| || Sbjct 9057067 TCCGTCATGTCCTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGC 9057122 >seq17429 Length=4233967 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 749679 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 749738 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 749739 GTGGGTTCGAACCCCACACCTGACAA 749764 >seq17438 Length=17193109 Score = 104 bits (114), Expect = 3e-17 Identities = 77/89 (87%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||| ||||| |||| ||| | | |||| Sbjct 1354023 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGCTCTGTTTCTCGAAAGAGAGC 1353964 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||||| |||||||||||||| || Sbjct 1353963 GTGGGTTCGAATCCCACACCTGACAAGTT 1353935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556739404345600