Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq17440 93.3 4e-14 >seq17440 Length=24565398 Score = 93.3 bits (102), Expect = 4e-14 Identities = 229/346 (66%), Gaps = 5/346 (1%) Strand=Plus/Plus Query 107448 ATTCCAATAATTCCGCAGCCCAAGCGGCCCCCCGAATTGCCTGTCGTTTTGCTAAGTGGG 107507 || ||||||| |||||||| | ||| | || | ||| || || || ||||| || | Sbjct 18410033 ATGCCAATAACACCGCAGCCAATGCGAGCGCCAGCATTTCCAGTTGTCTTGCTCAGCTCG 18410092 Query 107508 TGGTCGGTAAGGCCCAGGTCGTCGCGGTCCGTGTGCACGACCAAACTACGGCCCAGAATA 107567 ||| || ||||| || ||| | || | || ||||| | | || || | ||| Sbjct 18410093 TGGCCGCCCTTGCCCAAATCATCGGGATCAGCATGGACGACAACTGTGCGTCCGATAATG 18410152 Query 107568 CTCAGCGGGCCGTACAAACTGATTACGTTATCGCTCATGTTTATTGGCGTAAGCGCGGTG 107627 || | || |||| |||| | |||||| | ||||| | || || | | || Sbjct 18410153 CTGTTGGCACCAAACAACGTGATCTCTTTATCGGTGATGTTAACCGGAGTGGGTCCATTG 18410212 Query 107628 C-AGCCGACGGAGCGCACGTTGCCCAAATCGCCGACGTGACGCTCCGCGGCGTCGGGCGC 107686 | || | || | ||||||||||||||| | ||||| | | || || || Sbjct 18410213 CCAGTAGCCGTT----ATGTTGCCCAAATCGCCTAGATGACGAACGCCATCGGTTGGTGC 18410268 Query 107687 GCCATGCTGCTGATGCGTAGGATTAAAGTGTTCGCCTGCCGACGTGCACCCATTGCTTGT 107746 |||||||| || || |||||||||||| || | |||| |||| || || | | Sbjct 18410269 GCCATGCTCCTTCTGGTGAGGATTAAAGTGCGGCCCCGACGACATGCATCCGTTTGTATT 18410328 Query 107747 GTCGCCAAATTCGTGCACGTGAAAACCGTGCAAGCCGCGCGGCAAA 107792 |||||||||||| ||||| || || ||||||||||| ||| |||| Sbjct 18410329 GTCGCCAAATTCATGCACATGGAAGCCGTGCAAGCCTTGCGCCAAA 18410374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422950082848000