Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq17436 102 7e-17
seq17434 100 2e-16
seq17440 98.7 8e-16
>seq17436
Length=11997470
Score = 102 bits (112), Expect = 7e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | | || || || | || || ||||| || |||||||||||
Sbjct 6692853 ATGCCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCA 6692794
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| || |||||| || || || || ||| |||| |||||||| || || ||
Sbjct 6692793 GAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 6692734
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| ||||| || | | |||| ||| |||| | ||
Sbjct 6692733 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCC 6692674
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| ||| | || ||||| |||| |||||| || || |||||||||
Sbjct 6692673 ACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCATG 6692623
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | | || || |||| || || || || || |||||||||||
Sbjct 6692169 ATGCCACCACGCAGGCGGAGCACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCA 6692110
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| || |||||| || || || || || |||| |||||||| || || ||
Sbjct 6692109 GAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGG 6692050
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| ||||| || | | |||| ||| |||| | ||
Sbjct 6692049 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCC 6691990
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | || ||||| |||| ||| || || |||||||||||
Sbjct 6691989 ACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 6691940
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | | || || || | || || ||||| || |||||||||||
Sbjct 6692397 ATGCCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCA 6692338
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| || |||||| || || || || || |||| |||||||| || || ||
Sbjct 6692337 GAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGG 6692278
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| ||||| || | | |||| ||| |||| | ||
Sbjct 6692277 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCC 6692218
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| ||| | || ||||| |||| ||| || || || |||||||||
Sbjct 6692217 ACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 6692167
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | | || || || | || || || || || |||||||||||
Sbjct 6693309 ATGCCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCA 6693250
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| || |||||| || || || || ||| |||| |||||||| || || ||
Sbjct 6693249 GAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 6693190
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| ||||| || | | |||| ||| || | | ||
Sbjct 6693189 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCC 6693130
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| ||| | || ||||| |||| |||||| || || |||||||||
Sbjct 6693129 ACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCATG 6693079
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | | || || || | || || || || || |||||||||||
Sbjct 6693081 ATGCCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCA 6693022
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| || |||||| || || || || || |||| |||||||| || || ||
Sbjct 6693021 GAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGG 6692962
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| ||||| || | | |||| ||| |||| | ||
Sbjct 6692961 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCC 6692902
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| ||| | || ||||| |||| ||| || || || |||||||||
Sbjct 6692901 ACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 6692851
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | | || || || | || || || || || |||||||||||
Sbjct 6693537 ATGCCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCA 6693478
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| || |||||| || || || || ||| |||| |||||||| || || ||
Sbjct 6693477 GAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 6693418
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| ||||| || | | |||| ||| || | | ||
Sbjct 6693417 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCC 6693358
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| ||| | || ||||| |||| ||| || || || |||||||||
Sbjct 6693357 ACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 6693307
Score = 86.0 bits (94), Expect = 5e-12
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 114189 GATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCG 114248
|| || || || ||||||||||| | ||| || |||||| || || || || |||
Sbjct 6693729 GACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCG 6693670
Query 114249 TAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC 114308
|||| |||||||| || || || |||||||| || ||||| ||||| || |
Sbjct 6693669 AAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACA 6693610
Query 114309 TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTT 114368
| |||| ||| || | | || || |||| ||| | || ||||| |||| ||| ||
Sbjct 6693609 TTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTG 6693550
Query 114369 ACAAAAATCTGCATG 114383
|| || |||||||||
Sbjct 6693549 ACGAAGATCTGCATG 6693535
>seq17434
Length=8399593
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| || | | || || || | || || ||||| ||||||||||||||
Sbjct 1558168 ACCACCACGAAGGCGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGA 1558109
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
| ||| ||| |||||| | ||| || ||||| |||| | |||||| || || |||||
Sbjct 1558108 AAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGG 1558049
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||||||||| ||||| ||| | | ||| | ||| || | | ||||||
Sbjct 1558048 AATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGAC 1557989
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || || || ||||| || || || |||||
Sbjct 1557988 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941
>seq17440
Length=24565398
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215
|| || || || | || ||| || || | || || || || || || ||||| ||| |
Sbjct 434625 CCACCCCGCAGACGCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGAC 434684
Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275
| || ||| |||||| | ||||| || ||| ||||||||||||| || || ||||||
Sbjct 434685 AAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGGA 434744
Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335
|| || || ||||| ||| || || | | ||||| |||||| | | ||| ||
Sbjct 434745 ATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTAGGTTCCACT 434804
Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|||| || | || || || |||| ||||| || || ||||||||
Sbjct 434805 TCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 434851
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232
||| || || | || || || || |||||||| || ||| || || ||| ||||||
Sbjct 435326 AACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTC 435385
Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292
| ||||| || ||| ||||||||||||||||||| || || || || || |||||
Sbjct 435386 CAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTG 435445
Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352
|||||| || | | |||| || |||| | ||| || |||| || | || ||
Sbjct 435446 AATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTCTT 435505
Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||||| || || ||||||||
Sbjct 435506 TCCAGTCAATGTTTTAACGAAGATCTGCAT 435535
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232
||| || || | || || || || |||||||| || ||| || || ||| ||||||
Sbjct 435782 AACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTC 435841
Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292
| ||||| || ||| ||||||||||||||||||| || || || || || |||||
Sbjct 435842 CAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTG 435901
Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352
|||||| || | | |||| || |||| | ||| || |||| || | || ||
Sbjct 435902 AATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTCTT 435961
Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||||| || || ||||||||
Sbjct 435962 TCCAGTCAATGTTTTAACGAAGATCTGCAT 435991
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232
||| || || | || || ||||| ||||| || || ||| || || ||| ||||||
Sbjct 435098 AACCAAGTGGAGAGTCGACTCTTTCTGAATATTATAGTCGGACAAGGTGCGACCATCTTC 435157
Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292
| ||||| || ||| ||||||||||||| ||||| || || || || || |||||
Sbjct 435158 CAACTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTG 435217
Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352
||||| || | | |||| ||||||| | ||| || |||| || | || ||
Sbjct 435218 GATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTGATGGTCTT 435277
Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||||| || || ||||||||
Sbjct 435278 CCCAGTCAATGTTTTAACGAAGATCTGCAT 435307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420045100433280
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