Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq17436 102 7e-17 seq17434 100 2e-16 seq17440 98.7 8e-16 >seq17436 Length=11997470 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || ||||| || ||||||||||| Sbjct 6692853 ATGCCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCA 6692794 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| || || || || ||| |||| |||||||| || || || Sbjct 6692793 GAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 6692734 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | |||| ||| |||| | || Sbjct 6692733 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCC 6692674 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || ||||| |||| |||||| || || ||||||||| Sbjct 6692673 ACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCATG 6692623 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || |||| || || || || || ||||||||||| Sbjct 6692169 ATGCCACCACGCAGGCGGAGCACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCA 6692110 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| || || || || || |||| |||||||| || || || Sbjct 6692109 GAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGG 6692050 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | |||| ||| |||| | || Sbjct 6692049 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCC 6691990 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| |||| ||| || || ||||||||||| Sbjct 6691989 ACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 6691940 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || ||||| || ||||||||||| Sbjct 6692397 ATGCCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCA 6692338 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| || || || || || |||| |||||||| || || || Sbjct 6692337 GAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGG 6692278 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | |||| ||| |||| | || Sbjct 6692277 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCC 6692218 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || ||||| |||| ||| || || || ||||||||| Sbjct 6692217 ACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 6692167 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || || || || ||||||||||| Sbjct 6693309 ATGCCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCA 6693250 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| || || || || ||| |||| |||||||| || || || Sbjct 6693249 GAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 6693190 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | |||| ||| || | | || Sbjct 6693189 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCC 6693130 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || ||||| |||| |||||| || || ||||||||| Sbjct 6693129 ACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCATG 6693079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || || || || ||||||||||| Sbjct 6693081 ATGCCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCA 6693022 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| || || || || || |||| |||||||| || || || Sbjct 6693021 GAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGG 6692962 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | |||| ||| |||| | || Sbjct 6692961 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCC 6692902 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || ||||| |||| ||| || || || ||||||||| Sbjct 6692901 ACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 6692851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || || || || ||||||||||| Sbjct 6693537 ATGCCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCA 6693478 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| || || || || ||| |||| |||||||| || || || Sbjct 6693477 GAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 6693418 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | |||| ||| || | | || Sbjct 6693417 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCC 6693358 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || ||||| |||| ||| || || || ||||||||| Sbjct 6693357 ACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 6693307 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 114189 GATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCG 114248 || || || || ||||||||||| | ||| || |||||| || || || || ||| Sbjct 6693729 GACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCG 6693670 Query 114249 TAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC 114308 |||| |||||||| || || || |||||||| || ||||| ||||| || | Sbjct 6693669 AAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACA 6693610 Query 114309 TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTT 114368 | |||| ||| || | | || || |||| ||| | || ||||| |||| ||| || Sbjct 6693609 TTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTG 6693550 Query 114369 ACAAAAATCTGCATG 114383 || || ||||||||| Sbjct 6693549 ACGAAGATCTGCATG 6693535 >seq17434 Length=8399593 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || || || | || || ||||| |||||||||||||| Sbjct 1558168 ACCACCACGAAGGCGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGA 1558109 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| ||| |||||| | ||| || ||||| |||| | |||||| || || ||||| Sbjct 1558108 AAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGG 1558049 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| ||||| ||| | | ||| | ||| || | | |||||| Sbjct 1558048 AATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGAC 1557989 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || ||||| || || || ||||| Sbjct 1557988 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941 >seq17440 Length=24565398 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || || || || | || ||| || || | || || || || || || ||||| ||| | Sbjct 434625 CCACCCCGCAGACGCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGAC 434684 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| |||||| | ||||| || ||| ||||||||||||| || || |||||| Sbjct 434685 AAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGGA 434744 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| ||| || || | | ||||| |||||| | | ||| || Sbjct 434745 ATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTAGGTTCCACT 434804 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || || || |||| ||||| || || |||||||| Sbjct 434805 TCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 434851 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || || || || |||||||| || ||| || || ||| |||||| Sbjct 435326 AACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTC 435385 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | ||||| || ||| ||||||||||||||||||| || || || || || ||||| Sbjct 435386 CAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTG 435445 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 |||||| || | | |||| || |||| | ||| || |||| || | || || Sbjct 435446 AATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTCTT 435505 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||||| || || |||||||| Sbjct 435506 TCCAGTCAATGTTTTAACGAAGATCTGCAT 435535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || || || || |||||||| || ||| || || ||| |||||| Sbjct 435782 AACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTC 435841 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | ||||| || ||| ||||||||||||||||||| || || || || || ||||| Sbjct 435842 CAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTG 435901 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 |||||| || | | |||| || |||| | ||| || |||| || | || || Sbjct 435902 AATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTCTT 435961 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||||| || || |||||||| Sbjct 435962 TCCAGTCAATGTTTTAACGAAGATCTGCAT 435991 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || || ||||| ||||| || || ||| || || ||| |||||| Sbjct 435098 AACCAAGTGGAGAGTCGACTCTTTCTGAATATTATAGTCGGACAAGGTGCGACCATCTTC 435157 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | ||||| || ||| ||||||||||||| ||||| || || || || || ||||| Sbjct 435158 CAACTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTG 435217 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | |||| ||||||| | ||| || |||| || | || || Sbjct 435218 GATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTGATGGTCTT 435277 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||||| || || |||||||| Sbjct 435278 CCCAGTCAATGTTTTAACGAAGATCTGCAT 435307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420045100433280