Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq17439 178 2e-39 seq17434 131 3e-25 >seq17439 Length=18325388 Score = 178 bits (196), Expect = 2e-39 Identities = 307/435 (71%), Gaps = 16/435 (4%) Strand=Plus/Minus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||| |||||||||||||| || ||||| || || ||||| |||| | || | Sbjct 9057019 TGGCTTTCTTCGCCGCCTCCGATGGCATTGTTAACGAGAATCTGGTTGAGCGCTTTAGCC 9056960 Query 42484 AAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 | || |||||| ||| ||||||||||||||||| || || ||||| ||||| ||||| Sbjct 9056959 AGGAAGTGCAGATTACA--GAGGCGCGCTGCTTCTATGGTTTTCAGATTGCCATGGAGAA 9056902 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC-CGTCGAGC 42600 || ||||| ||| ||||| || || |||| || |||| ||||| | || ||| Sbjct 9056901 TGTACACTCAGAGATGTACAGTGTGCTAATCGACACTTATATCCGAGATCCTCATC-AGC 9056843 Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCC--CTGCATCAAGAAGAAGGCGGACTG 42658 | | || ||||| || || || || ||||| ||| | ||| ||||||||||| Sbjct 9056842 GCGATTATCTCTTCAATGCTATTGAAACAATGCCGGCTG--TAAAGCGTAAGGCGGACTG 9056785 Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 ||||||| ||||| | | | | || | || || ||| | | | ||||| Sbjct 9056784 GGCGCTCTCTTGGAT-TTCATCCAAGGCTGCCAACTTTGGGGAGCGCATTATTGCCTTCG 9056726 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | |||||||| ||||||||||| ||| || ||||||||||||||||| || | | Sbjct 9056725 CTGCCGTCGAAGGCATCTTCTTTAGCGGCAGTTTTGCCTCCATCTTCTGGCTTAA--AAA 9056668 Query 42778 AGGTGTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 ||| | |||||||| || || ||||| ||||| |||||| | | || |||||||| Sbjct 9056667 GCGTGGCCTAATGCCCGGTCTGACTTTCTCAAACGAGCTCATCTCCCGTGATGAGGGGCT 9056608 Query 42836 GCATAGGGACTTTGC 42850 |||| | |||||||| Sbjct 9056607 GCATTGCGACTTTGC 9056593 >seq17434 Length=8399593 Score = 131 bits (144), Expect = 3e-25 Identities = 690/1091 (63%), Gaps = 42/1091 (4%) Strand=Plus/Plus Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 ||||||||||| ||||| || ||||||||||| || ||||| ||| | | |||| Sbjct 1622590 TTCACCACCTGGAACTCACCGGACAGCACGCGTCGGGTGTAGATGTTTGAGGTATACGGC 1622649 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 || | || | ||||||| ||| || ||||| || || |||||||||| || Sbjct 1622650 TCAAACGATTCATTATTGCCCATTATTTGAGCCGTAGATGCGGTTGGCATGGGCGCAACA 1622709 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCAC 244270 |||||| || | ||| || ||| || ||| || | ||| |||||||||||| Sbjct 1622710 AGCAGAGAATTGCGCACACCATGCTCCTTGATCGACAGCTTAAGCGAGTTCCAGTCCCAG 1622769 Query 244271 ATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTG 244330 | || ||| | | || | ||||||||| || |||| | | |||||||| Sbjct 1622770 A-----GATCGGT--TGGTGTCT--TGCCCCACATATCGTACTGTAAGATACCCTTGCTA 1622820 Query 244331 ACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCG 244390 || || || || ||||| ||||| || || ||||||| | ||||| | Sbjct 1622821 ACTGGACTTCCTGGATAGGTTTCATAGGGTCCTTCCTTTTGGGCCAATTCGCAGCTGGCT 1622880 Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGT---CGCG-GGCCTT 244446 || || ||| | | |||||||| || ||||| ||||| || | | | ||||| Sbjct 1622881 TCCAGTGCGCCAAAATAGATGGTTTCAAAGAT----TTGTTGATTTAAAAGTGCGGCCTC 1622936 Query 244447 GCCGCAGGTGAAGGGGATG-CCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 ||| | | ||||| | ||| | || || | || || | ||| ||||| || | Sbjct 1622937 TTCGC-TCTCATAAGGATGACGCATTAGAATCAATGCATCCGCGAATCCTTGCACACCAA 1622995 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 | || ||||||| || || ||||| | | || || || | || || ||||| Sbjct 1622996 TACCAATGGGTCGATGGCGAAAATTGGATTTCTTTGCCTCCGGAAGCGGATAGTAGTTGA 1623055 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625 ||| || | || || | || ||| | | | ||| || ||| || | Sbjct 1623056 TGTCAATTATTTTATTCAAATTCTTGGTTACTGTTTTGGTGACTTCTTTCAGTTTCTTGA 1623115 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGA-CG 244684 |||||||| | | |||| | |||||||| ||| | || | || Sbjct 1623116 AGTCGTAC------GTTTTGTCGG---------ACGTCACAAACATGTTCAATGCAATCG 1623160 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 | || | ||||| ||||| | || || | | |||| |||||| || ||||| Sbjct 1623161 AT-GCTAAATTGCACACGGCAATTTCATCGGGTGCCGAATACTCGACAATTTCAGTGCAT 1623219 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 || |||||||| ||||||||||||| | || |||||| |||| |||||| | |||| Sbjct 1623220 AGATTACTGCATTTGATGGTGCCCACATTTTGCTGATTGCTCTTGCGGTTGCATGAGTCC 1623279 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 ||| | |||||| | || || ||||| | ||| || | | || | ||| || Sbjct 1623280 TTGAACAGCATGTAAGGTGTGCCAGTCTCCACCTGTGCTTCAATGATGGCAAACCAAAGT 1623339 Query 244865 TCCCTAGCCTTGACCGTCCTGCGA---GCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGG 244921 ||| || | | || ||| || ||||||||| |||||| | |||||| Sbjct 1623340 GTTTGAGCTTTAA--TTACT-CGATTCGCTTTGCCCTCTTTCTCGTATTGAACGTACAGT 1623396 Query 244922 GCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGA 244981 ||| || ||| |||||| || || | |||||||| ||| |||||||| || Sbjct 1623397 TTCTCAAAATCGTCGCCCCAAACATCTTGGAGGCCGGGACACTTATGTGGGCACATCAGG 1623456 Query 244982 CTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGG 245041 ||| || | | | | ||| | | ||| || || || || ||||| | ||| | Sbjct 1623457 GACCAATCCTCATTGGCTTCGACGCGTTTCATAAACAGATCAGGTATCCATAAGGCATAA 1623516 Query 245042 AAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCA 245101 || || || | | || ||||| || ||| ||||| ||| ||| |||| ||| || Sbjct 1623517 AACAGCTCACGTGCCCGATGCTCCTCTTTGCCCGTGTTTTTCTTCAAATCCATAAATTCT 1623576 Query 245102 AAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCT 245161 || | || ||||| ||||||| |||| || | || || || ||||| ||| Sbjct 1623577 AATATATCCGAATGCCACGGCTCCAAATAGATGGCAAATGCACCCGGTCGCTTACCGCCA 1623636 Query 245162 CCCTGGTCCAC 245172 ||||| ||||| Sbjct 1623637 CCCTGATCCAC 1623647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944133334054400