Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq17438 159 3e-34 >seq17438 Length=17193109 Score = 159 bits (176), Expect = 3e-34 Identities = 277/399 (69%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 20192 TAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGA 20251 |||| ||| | ||| |||| |||||| | ||| || || || | ||||| || ||||| Sbjct 3984309 TAGACGTGCGTATCGCCCATCGTGTGTACAAAGTCGCCAGGCTTCAGACCCGTCACATGT 3984368 Query 20252 GCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATG 20311 |||| |||||| || | |||| ||| || ||||| || ||||| || | ||||||| Sbjct 3984369 GCAATCATATAGGTGAGCAGGGCGTAGGATGCGATGTTGAAGGGAACACCTAGACCCATG 3984428 Query 20312 TCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC----GTCAGCTACATAAA--AT 20365 || | | |||||||| ||| ||||| ||||| || | | || ||| ||| || Sbjct 3984429 TCGGCACTGCGCTGATACATCTGGCAGGAGAGCTCGCCCCTTGACTGCGACACAAAGAAT 3984488 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || | |||| || || || ||||||||| | | ||| ||| ||||| || Sbjct 3984489 TGCACCAGGCAGTGGCACGGTGGCAGCGCCATCTTAGGTATATCCAACGGATTCCATGCG 3984548 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485 |||| ||||| | | ||| ||||| || ||| || | | | | ||| Sbjct 3984549 GACATTATGATGCGACGATCCGCGGGATTGTTGCGTATGGTGTCAATCACCTGCTGCAAC 3984608 Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACG-TACGCCGCCCCAAAGTG 20544 ||||| | ||||||||||||||||| ||| ||| || || ||| | ||||||||||| Sbjct 3984609 TGGTCGACGCCCTGGCCTGTATAGTCGTCAT-CGCAGCCGCGATACTCGGCCCCAAAGTG 3984667 Query 20545 CCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583 | ||||||||||||||| || || |||| ||| ||||| Sbjct 3984668 ACGCCACTGGAAACCGTACACGGGACCCAGATCTCCCTC 3984706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441276580729600