Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq17413 91.5 1e-13 seq17436 86.0 5e-12 >seq17413 Length=162499 Score = 91.5 bits (100), Expect = 1e-13 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 110156 CATGTATTAGCTCTAGAATTACCTTAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 110215 Query 114392 AAAACTGATATATTGAGCCATT 114413 | |||||||||| |||||| || Sbjct 110216 ATAACTGATATAATGAGCCTTT 110237 Score = 91.5 bits (100), Expect = 1e-13 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 110156 CATGTATTAGCTCTAGAATTACCTTAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 110215 Query 115589 AAAACTGATATATTGAGCCATT 115610 | |||||||||| |||||| || Sbjct 110216 ATAACTGATATAATGAGCCTTT 110237 >seq17436 Length=11997470 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||| || || ||| ||||||||| ||||||||||| | Sbjct 6692166 CCACCACGCAGGCGGAGCACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6692107 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || |||| |||||||||||||| ||||| ||||||||||| || Sbjct 6692106 AGAGTG-CGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGG 6692048 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 6692047 AATGCCCTCCTTGTCC 6692032 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||| || || ||| ||||||||| ||||||||||| | Sbjct 6693078 CCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6693019 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || |||| |||||||||||||| ||||| ||||||||||| || Sbjct 6693018 AGAGTG-CGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGG 6692960 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 6692959 AATGCCCTCCTTGTCC 6692944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396978004386880