Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq17413 91.5 1e-13
seq17436 86.0 5e-12
>seq17413
Length=162499
Score = 91.5 bits (100), Expect = 1e-13
Identities = 71/82 (87%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391
|||||||| |||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct 110156 CATGTATTAGCTCTAGAATTACCTTAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 110215
Query 114392 AAAACTGATATATTGAGCCATT 114413
| |||||||||| |||||| ||
Sbjct 110216 ATAACTGATATAATGAGCCTTT 110237
Score = 91.5 bits (100), Expect = 1e-13
Identities = 71/82 (87%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588
|||||||| |||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct 110156 CATGTATTAGCTCTAGAATTACCTTAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 110215
Query 115589 AAAACTGATATATTGAGCCATT 115610
| |||||||||| |||||| ||
Sbjct 110216 ATAACTGATATAATGAGCCTTT 110237
>seq17436
Length=11997470
Score = 86.0 bits (94), Expect = 5e-12
Identities = 102/136 (75%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || ||||||| || || ||| ||||||||| ||||||||||| |
Sbjct 6692166 CCACCACGCAGGCGGAGCACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6692107
Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| | || || | || |||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 6692106 AGAGTG-CGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGG 6692048
Query 34020 CACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 6692047 AATGCCCTCCTTGTCC 6692032
Score = 86.0 bits (94), Expect = 5e-12
Identities = 102/136 (75%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || ||||||| || || ||| ||||||||| ||||||||||| |
Sbjct 6693078 CCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6693019
Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| | || || | || |||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 6693018 AGAGTG-CGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGG 6692960
Query 34020 CACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 6692959 AATGCCCTCCTTGTCC 6692944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396978004386880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |