Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_009514.1 Length=47021 Score E Sequences producing significant alignments: (Bits) Value seq11536 1651 0.0 >seq11536 Length=2982 Score = 1651 bits (1830), Expect = 0.0 Identities = 982/1025 (96%), Gaps = 1/1025 (0%) Strand=Plus/Plus Query 15837 GTGAGCCGTAATTATCATCTTCGCGGGCGCATTCTGCAGGTGCCGTCGAACTATAACCCG 15896 |||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1958 GTGAGCCGTA-TTATCATCTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCG 2016 Query 15897 CAGACGCGACAATACAGCGGTATCTGGGACGGAACGTTAAAACCGGCATACAGCAACAAC 15956 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2017 CAGACGCGGCAATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAAC 2076 Query 15957 ATGGCCTGGTGTCTGTGGGATATGCTTACCCATCCGCGCTACGGCATGGGGAAACGTCTT 16016 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2077 ATGGCCTGGTGTCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTT 2136 Query 16017 GGTGCGGCGGATGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCA 16076 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2137 GGTGCGGCGGATGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCA 2196 Query 16077 GTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACA 16136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2197 GTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACA 2256 Query 16137 CAGCGCAAGGCGTGGGATGTGCTCAGTGATTTCTGCTCGGCGATGCGCTGTATGCCGGTA 16196 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2257 CAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGTA 2316 Query 16197 TGGAACGGGCAAACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGGTGTGGACCTAT 16256 ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2317 TGGAACGGGCAGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTAT 2376 Query 16257 AACCGCAGTAATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCC 16316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2377 AACCGCAGTAATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCC 2436 Query 16317 CTGAAGGACCGCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAG 16376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2437 CTGAAGGACCGCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAG 2496 Query 16377 ACGGCAACAGAGCTTGTGGAGGACACGCAGGCCATTGCCCGTTACGGTCGTAACGTCACG 16436 ||||| ||||||||||| || || ||||||||||||||||||||||||||||| || ||| Sbjct 2497 ACGGCGACAGAGCTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACG 2556 Query 16437 AAGATGGATGCCTTTGGCTGTACCAGTCGGGGGCAGGCACACCGAGCCGGGCTGTGGCTG 16496 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 2557 AAGATGGATGCCTTTGGCTGTACCAGCCGGGGGCAGGCACACCGCGCCGGGCTGTGGCTG 2616 Query 16497 ATTAAAACAGAACTGCTGGAAACGCAGACCGTGGACTTCAGCGTGGGTGCTGAAGGGCTT 16556 ||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||| Sbjct 2617 ATTAAAACAGAACTGCTGGAAACGCAGACCGTGGATTTCAGCGTCGGCGCAGAAGGGCTT 2676 Query 16557 CGCCATGTACCGGGCGATGTCATTGAAATCTGCGATGATGACTATGCCGGTATCAGCACC 16616 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2677 CGCCATGTACCGGGCGATGTTATTGAAATCTGCGATGATGACTATGCCGGTATCAGCACC 2736 Query 16617 GGCGGGCGCGTGCTGGCGGTGAACAGCCAGACCCGGACGCTGACGCTCGACCGTGAAATC 16676 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2737 GGTGGTCGTGTGCTGGCGGTGAACAGCCAGACCCGGACGCTGACGCTCGACCGTGAAATC 2796 Query 16677 ACGCTGCCATCCTCCGGTACCACGCTGATAAGCCTGGTTGACGGAAGTGGTAATCCGGTC 16736 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 2797 ACGCTGCCATCCTCCGGTACCGCGCTGATAAGCCTGGTTGACGGAAGTGGCAATCCGGTC 2856 Query 16737 AGCGTGGAGGTTCAGTCCGTCACCGACGGACTTAAGGTGAAAGTGAACCGGGTTCCTGAC 16796 ||||||||||||||||||||||||||||| | ||||| ||||||| ||| ||||||||| Sbjct 2857 AGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTGAGCCGTGTTCCTGAC 2916 Query 16797 GGCGTTGCAGAATACAGCGTGTGGGGGCTGAAGTTGCCGACGTTGCGTCAGCGCCTGTTC 16856 || ||||| ||||||||||| |||| ||||||| |||||||| |||| ||||| |||||| Sbjct 2917 GGTGTTGCTGAATACAGCGTATGGGAGCTGAAGCTGCCGACGCTGCGCCAGCGACTGTTC 2976 Query 16857 CGCTG 16861 ||||| Sbjct 2977 CGCTG 2981 Score = 978 bits (1084), Expect = 0.0 Identities = 599/634 (94%), Gaps = 2/634 (0%) Strand=Plus/Plus Query 15849 TATCATCTT-CGCGGGCGCATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGACA 15907 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1 TATCATCTCGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCA 60 Query 15908 ATACAGCGGTATCTGGGACGGAACGTTAAAACCGGCATACAGCAACAACATGGCCTGGTG 15967 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 61 ATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTG 120 Query 15968 TCTGTGGGATATGCTTACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 16027 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 180 Query 16028 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 16087 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 240 Query 16088 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGCAAGGC 16147 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 241 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGC 300 Query 16148 GTGGGATGTGCTCAGTGATTTCTGCTCGGCGATGCGCTGTATGCC-GGTATGGAACGGGC 16206 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 301 GTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGGTATGGAACGGGC 360 Query 16207 AAACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGGTGTGGACCTATAACCGCAGTA 16266 | ||||||||||||||||| |||||||||||||||||| |||||||||||||| | || Sbjct 361 AGACGCTGACGTTCGTGCATGACCGACCGTCGGATAAGACGTGGACCTATAACCTCTTTA 420 Query 16267 ATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCCCTGAAGGACC 16326 ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| |||| Sbjct 421 ATGTGATGATGCCGGATGATGGCGCGCCTTTCCGCTACAGCTTCTTCGCCCTGAATGACC 480 Query 16327 GCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAGACGGCAACAG 16386 |||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| Sbjct 481 GCCATAATGCCGTTGAGGTGAACTGGATTGACCCAAACAACGGCTGGGAGACTGCGACAG 540 Query 16387 AGCTTGTGGAGGACACGCAGGCCATTGCCCGTTACGGTCGTAACGTCACGAAGATGGATG 16446 ||||||| || | ||||| ||||||||| ||||| ||||||| || || |||||||||| Sbjct 541 AGCTTGTTGAATATACGCATGCCATTGCCTGTTACAGTCGTAATGTTACTAAGATGGATG 600 Query 16447 CCTTTGGCTGTACCAGTCGGGGGCAGGCACACCG 16480 |||||||||||||||| ||||||||||||||||| Sbjct 601 CCTTTGGCTGTACCAGCCGGGGGCAGGCACACCG 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150314463426240