Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq17440 132 1e-25 seq17436 125 2e-23 seq17434 116 9e-21 seq17438 102 2e-16 >seq17440 Length=24565398 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||||||||||| | ||||| || ||||| || |||||||| |||||| Sbjct 435117 TCTTTCTGAATATTATAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAG 435176 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || ||| |||||||| || || || ||||| || || || ||| Sbjct 435177 ATGAGACGCTGCTG---GTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACG 435233 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | ||| || || || ||||| |||||||| |||| || || Sbjct 435234 TTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTGATGGTCTTCCCAGTCAATGTTTTA 435293 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 435294 ACGAAGATCTGCATT 435308 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||||| | ||||| || ||||| || |||||||| |||||| Sbjct 435345 TCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAG 435404 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||||||||| ||| |||||||| || || || || || || || || ||| Sbjct 435405 ATGAGACGCTGTTG---GTCTGGGGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTAACG 435461 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| |||| | ||| || || || ||||| ||||| || |||| || || Sbjct 435462 TTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTCTTTCCAGTCAATGTTTTA 435521 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 435522 ACGAAGATCTGCATT 435536 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||||| | ||||| || ||||| || |||||||| |||||| Sbjct 435801 TCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAG 435860 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||||||||| ||| |||||||| || || || || || || || || ||| Sbjct 435861 ATGAGACGCTGTTG---GTCTGGGGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTAACG 435917 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| |||| | ||| || || || ||||| ||||| || |||| || || Sbjct 435918 TTCTCAATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTCTTTCCAGTCAATGTTTTA 435977 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 435978 ACGAAGATCTGCATT 435992 >seq17436 Length=11997470 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || || | || |||||||| ||||| | || || || |||||| Sbjct 6692586 TCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAG 6692527 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| ||| |||||| || || || || |||||||| || || ||||| Sbjct 6692526 ATCAGACGCTGCTGA---TCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACA 6692470 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| || |||| ||||||| Sbjct 6692469 TTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTG 6692410 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 6692409 ACGAAGATCTGCAT 6692396 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || |||||||| ||||| | || || || || ||| Sbjct 6692358 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAG 6692299 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| ||| |||||| || || || || |||||||| || || ||||| Sbjct 6692298 ATCAGACGCTGCTGA---TCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACA 6692242 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| || |||| ||||||| Sbjct 6692241 TTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTG 6692182 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 6692181 ACGAAGATCTGCAT 6692168 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || |||||||| ||||| | || || || |||||| Sbjct 6692814 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAG 6692755 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||||||| || || || || |||||||| || || ||||| Sbjct 6692754 ATCAGACGCTGCTG---ATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACA 6692698 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| || |||| ||| ||| Sbjct 6692697 TTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTG 6692638 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 6692637 ACGAAGATCTGCAT 6692624 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | || |||||||| ||||| | || || || || ||| Sbjct 6692130 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAG 6692071 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| ||| |||||| || || || || |||||||| || || ||||| Sbjct 6692070 ATCAGACGCTGCTGA---TCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACA 6692014 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| || |||| ||||||| Sbjct 6692013 TTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTG 6691954 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 6691953 ACGAAAATCTGCAT 6691940 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | || |||||||| ||||| | || || || || ||| Sbjct 6693042 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAG 6692983 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| ||| |||||| || || || || |||||||| || || ||||| Sbjct 6692982 ATCAGACGCTGCTGA---TCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACA 6692926 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| || |||| ||||||| Sbjct 6692925 TTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTG 6692866 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 6692865 ACGAAGATCTGCAT 6692852 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | || |||||||| ||||| | || || || |||||| Sbjct 6693498 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAG 6693439 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| ||| |||||| || || || || |||||||| || || ||||| Sbjct 6693438 ATCAGACGCTGCTGA---TCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACA 6693382 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || || || | ||||| ||||| || |||| ||||||| Sbjct 6693381 TTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTG 6693322 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 6693321 ACGAAGATCTGCAT 6693308 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | || |||||||| ||||| | || || || |||||| Sbjct 6693726 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAG 6693667 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| ||| |||||| || || || || |||||||| || || ||||| Sbjct 6693666 ATCAGACGCTGCTGA---TCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACA 6693610 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || || || | ||||| ||||| || |||| ||||||| Sbjct 6693609 TTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTG 6693550 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 6693549 ACGAAGATCTGCAT 6693536 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | || |||||||| ||||| | || || || |||||| Sbjct 6693270 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAG 6693211 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||||||| || || || || |||||||| || || ||||| Sbjct 6693210 ATCAGACGCTGCTG---ATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACA 6693154 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || || || | ||||| ||||| || |||| ||| ||| Sbjct 6693153 TTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTG 6693094 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 6693093 ACGAAGATCTGCAT 6693080 >seq17434 Length=8399593 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || | || ||||| || ||||| ||||| || || || ||| Sbjct 1558131 TCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAG 1558072 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || | |||||| ||| ||||| ||||||||||| |||||||| || ||||| || Sbjct 1558071 ATTAAACGCTGCTGA---TCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACA 1558015 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | ||| || ||| || || || ||||| ||||| || || || || || Sbjct 1558014 TTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTA 1557955 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 1557954 ACGAAGATTTGCAT 1557941 >seq17438 Length=17193109 Score = 102 bits (112), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || | || | ||| || || ||||| || ||||||| Sbjct 16961281 CCACCGCGCAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 16961340 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| ||||| | || || || || ||||||| |||||| ||| |||||| Sbjct 16961341 AGGGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGA---TCTGGG 16961397 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || ||||| || || || || || || || || | || | || Sbjct 16961398 GGAATTCCCTCCTTGTCCTGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCC 16961457 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | ||||| ||||||||||| || ||||| || || || |||||| Sbjct 16961458 ACCTCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTCACAAAGATTTGCATT 16961508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179390806224320