Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq17438 91.5 3e-13 >seq17438 Length=17193109 Score = 91.5 bits (100), Expect = 3e-13 Identities = 301/458 (66%), Gaps = 10/458 (2%) Strand=Plus/Plus Query 297253 TGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAA-CCATTCA 297311 |||||| ||| | | || || || ||||| ||||| || || || |||| ||||| | Sbjct 4176735 TGGATTATAATTGGCTATCTTGGTGGACCAGCCGGTGCCAATGCC-CTCGGCGCCATTAA 4176793 Query 297312 CCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCATCAT 297371 |||||| |||| || | || | ||| | ||| || || | || ||||| Sbjct 4176794 CCAGAACCATCGGTATGATGGGTATATACCAAAGTGGCTCAATGCGCTGTCCATCATCTG 4176853 Query 297372 ACAGATATTTCAGAAGATTATCGTCCGTATCGACGAAA-ACCTGTCGAGTCTGAGGGTTC 297430 | |||| | ||| || ||| ||| || || || | | | || ||| | || | Sbjct 4176854 TCTGATACTGCAGCAGTGGATCATCCA-ATGGATGATAGATGAGACGGGTCAGCGGCGAC 4176912 Query 297431 AGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCG 297490 | | |||||||||||| || |||||||| ||| || || ||| ||| | | |||| Sbjct 4176913 ATTAATGTGAAAATATAACGAGCACTCGCACAATCTTTGCCGCCCGTCAAACGTGTACCG 4176972 Query 297491 AACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGG 297550 ||||| || ||| || | | ||||| || || || ||||| | ||| || || Sbjct 4176973 AACTGACCGCGTGGCTCCAGCAAATTGATATTGTTTGAGCCCACATAGTTCTGCGCCAGA 4177032 Query 297551 TTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGC-GCTATGCTCTGCAAC 297609 ||||| || ||| ||||| || | ||||| || |||||||| | || || || || Sbjct 4177033 TTCACAATCGTCATCTGCAGCGACACCTCGCCGTGATGATAGGCAGACAT-TTCGGCCAC 4177091 Query 297610 GTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAA--AGCTGAA 297667 |||| | ||| || |||||||| ||| | | || |||||||| | ||| Sbjct 4177092 CGAACCCGATAGCTGAGCCACCTTCACCTCGCGCTTATCGTTACGCTTGAAGCACGTGA- 4177150 Query 297668 TATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAAC 297705 | |||||||| || || |||||||| ||||| || Sbjct 4177151 -ACATCACTTTGCGCTGGCCAGGTTTGAGGCCATCCAC 4177187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102633561464000