Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq17438 118 1e-21 >seq17438 Length=17193109 Score = 118 bits (130), Expect = 1e-21 Identities = 287/426 (67%), Gaps = 14/426 (3%) Strand=Plus/Plus Query 171728 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 171787 || |||||||| || |||| ||| || || |||||||| || | | || ||||| | Sbjct 4176766 CCGGTGCCAATGCCCTCGGCGCCATTAACCAGAACCATCGGTATGATGGGTATATACCAA 4176825 Query 171788 TCTGGTTCAATCGCAC-GCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCGG 171846 ||| ||||| || | | |||||||| | ||| | |||| || || ||| || Sbjct 4176826 AGTGGCTCAAT-GCGCTGTCCATCATCTGTCTGATACTGCAGCAGTGGATCATCCAATGG 4176884 Query 171847 ATCAAAGATTTTACGAGCATCCTTGGTGAGTTT--TGTGAAGATGTACCTCGTTTGAGAC 171904 || | |||| ||| | || || || || |||||| || || | | | | Sbjct 4176885 ATGATAGATGAGACGGG--TCAGCGGCGACATTAATGTGAAAATATAACGAGC---ACTC 4176939 Query 171905 GCA---TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTG 171961 ||| |||||||| ||| | | ||| || || || ||||| | || || || | |||| Sbjct 4176940 GCACAATCTTTGCCGCCCGTCAAACGTGTACCGAACTGACCGCGTGGCTCCAGCAAATTG 4176999 Query 171962 ATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGAC 172020 ||||||||||| |||| |||| | |||| || |||||||| ||| || || || || Sbjct 4177000 ATATTGTTTGAGCCCACATAGTTCTGCGCCAGATTCACAATCGTCATCTGC-AGCGACAC 4177058 Query 172021 TTCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCAT 172080 || |||||||| ||||| ||| | || || || | ||| | ||| |||||||||| Sbjct 4177059 CTCGCCGTGATGATAGGCAGACATTTCGGCCACCGAACCCGATAGCTGAGCCACCTTCAC 4177118 Query 172081 CTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAG 172140 ||| ||| ||| | |||||||| |||| || || | ||| ||| ||||| Sbjct 4177119 CTCGCGCTTATCGTTACGCTTGAAGCACGTGAACATCACTTTGCGCTGGCCAGGTTTGAG 4177178 Query 172141 GCCGTC 172146 ||| || Sbjct 4177179 GCCATC 4177184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597223376915200