Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq17436 105 7e-18
seq17440 104 3e-17
seq17434 91.5 2e-13
seq17438 89.7 6e-13
seq17431 87.8 2e-12
seq14924 86.0 7e-12
>seq17436
Length=11997470
Score = 105 bits (116), Expect = 7e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| || | ||| |||||| || ||||||||||||| ||||| || |
Sbjct 6692611 ACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCC 6692552
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| || ||||| || || |||||||| || | || | || ||||||
Sbjct 6692551 ATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTT 6692492
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|||| ||| || || | || | | || ||| | ||||| || | |||||
Sbjct 6692491 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGAT 6692432
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| ||||| || | ||||| || ||||| |||||
Sbjct 6692431 GGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692396
Score = 86.0 bits (94), Expect = 7e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
|| ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||
Sbjct 11499637 TTCTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 11499578
Query 57063 ACTATACTACCGAGGAT 57079
||||||||| |||||||
Sbjct 11499577 ACTATACTATCGAGGAT 11499561
>seq17440
Length=24565398
Score = 104 bits (114), Expect = 3e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|||||||| | ||| | ||||| || | || |||||| ||||| || || || | |
Sbjct 435537 CCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGAC 435596
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
| || || | || || |||||||| || || || || | |||||| || || | ||
Sbjct 435597 AAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGGA 435656
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | |||||||||| ||| |||| | |||| | | | |||||||| | |||||
Sbjct 435657 ATTCCCTCCTTGTCC-TGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCAC 435715
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
|| | |||||||| ||||| || | |||||||||||||| ||||||
Sbjct 435716 TTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATT 435764
Score = 104 bits (114), Expect = 3e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|||||||| | ||| | ||||| || | || |||||| ||||| || || || | |
Sbjct 435993 CCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGAC 436052
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
| || || | || || |||||||| || || || || | |||||| || || | ||
Sbjct 436053 AAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGGA 436112
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | |||||||||| ||| |||| | |||| | | | |||||||| | |||||
Sbjct 436113 ATTCCCTCCTTGTCC-TGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCAC 436171
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
|| | |||||||| ||||| || | |||||||||||||| ||||| ||
Sbjct 436172 TTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATATT 436222
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||| || | ||| | |||||||| | ||| |||||| || |||||||| || | |
Sbjct 434853 CCTCCCCTGAGACGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 434912
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
| ||| || | || || |||||||| || || || || | ||||||||||| | ||
Sbjct 434913 AAAGTGCGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAAACGCTGCTGGTCTGGGGGG 434972
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161
| | ||||||||| ||| || || | || | | |||||| | ||| ||
Sbjct 434973 ATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACC 435032
Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
|| | || ||||| || || || || ||||| |||||||| ||||||
Sbjct 435033 TCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCATT 435080
Score = 87.8 bits (96), Expect = 2e-12
Identities = 69/82 (84%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 23275152 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 23275093
Query 57066 ATACTACCGAGGA--TTGAATA 57085
|||||| |||||| |||||||
Sbjct 23275092 ATACTATCGAGGACGTTGAATA 23275071
>seq17434
Length=8399593
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
|||||| |||||||| ||| || ||||| |||||||||| ||||| || | || ||
Sbjct 1558150 CACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTC 1558091
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
| ||||| ||||| || || | |||||||| || | || | | || ||||||
Sbjct 1558090 CAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 1558031
Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
||| || ||||| | | | || || || ||| || || | |||||||| ||
Sbjct 1558030 GATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 1557971
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| || || || || |||||||||||
Sbjct 1557970 ACCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054
||| ||| | ||||| || | | ||| |||||| ||||||||||||||||||||| |
Sbjct 987580 ATGTAAACATCTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 987639
Query 57055 TACTCACCACTATACTACCGAGGAT 57079
|||| |||||||||||| |||||||
Sbjct 987640 TACTAACCACTATACTATCGAGGAT 987664
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 4666226 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4666167
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 4666166 ATACTATCGAGGA 4666154
>seq17438
Length=17193109
Score = 89.7 bits (98), Expect = 6e-13
Identities = 154/221 (70%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| |||| || |||||| || || ||||| || | ||| || || |
Sbjct 16961292 ACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 16961351
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| || || || || | |||||||| || | || | | ||||||
Sbjct 16961352 ATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTT 16961411
Query 42113 GTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
|||| ||| | || | | | | | | | | ||||| | ||||| || | ||||
Sbjct 16961412 GTCC-TGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCACCTCCAAGGTGA 16961470
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212
|||| || || || || ||||| ||||||||||||||| ||
Sbjct 16961471 TGGTCTTCCCGGTGAGTGTCTTCACAAAGATTTGCATTGTC 16961511
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060
|||| ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |
Sbjct 7753976 AATTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAA 7754035
Query 57061 CCACTATACTACCGAGGA 57078
||||||||||| ||||||
Sbjct 7754036 CCACTATACTATCGAGGA 7754053
Score = 86.0 bits (94), Expect = 7e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||
Sbjct 7752925 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 7752866
Query 57065 TATACTACCGAGGATTG 57081
||||||| |||||| ||
Sbjct 7752865 TATACTATCGAGGACTG 7752849
Score = 86.0 bits (94), Expect = 7e-12
Identities = 68/81 (84%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 9348272 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 9348331
Query 57066 ATACTACCGAGGA--TTGAAT 57084
|||||| |||||| ||||||
Sbjct 9348332 ATACTATCGAGGATGTTGAAT 9348352
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059
||| | ||||| || | | ||| |||||| ||||||||||||||||||||| |||||
Sbjct 7753181 AAAGTCTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTA 7753122
Query 57060 ACCACTATACTACCGAGGA 57078
|||||||||||| ||||||
Sbjct 7753121 ACCACTATACTATCGAGGA 7753103
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
|| ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||
Sbjct 7753594 TTGTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 7753535
Query 57063 ACTATACTACCGAGGA 57078
||||||||| ||||||
Sbjct 7753534 ACTATACTATCGAGGA 7753519
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 7764945 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 7765004
Query 57066 ATACTACCGAGGAT 57079
|||||| |||||||
Sbjct 7765005 ATACTATCGAGGAT 7765018
>seq17431
Length=5172618
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 2186008 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 2185949
Query 57066 ATACTACCGAGGATTG 57081
|||||| |||||||||
Sbjct 2185948 ATACTATCGAGGATTG 2185933
>seq14924
Length=5632
Score = 86.0 bits (94), Expect = 7e-12
Identities = 68/81 (84%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 1920 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1979
Query 57066 ATACTACCGAGGA--TTGAAT 57084
|||||| |||||| ||||||
Sbjct 1980 ATACTATCGAGGATGTTGAAT 2000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543094379609600
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