Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq17436 105 7e-18 seq17440 104 3e-17 seq17434 91.5 2e-13 seq17438 89.7 6e-13 seq17431 87.8 2e-12 seq14924 86.0 7e-12 >seq17436 Length=11997470 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | ||| |||||| || ||||||||||||| ||||| || | Sbjct 6692611 ACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCC 6692552 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || ||||| || || |||||||| || | || | || |||||| Sbjct 6692551 ATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTT 6692492 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || || | || | | || ||| | ||||| || | ||||| Sbjct 6692491 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGAT 6692432 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || | ||||| || ||||| ||||| Sbjct 6692431 GGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692396 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 11499637 TTCTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 11499578 Query 57063 ACTATACTACCGAGGAT 57079 ||||||||| ||||||| Sbjct 11499577 ACTATACTATCGAGGAT 11499561 >seq17440 Length=24565398 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | ||||| || | || |||||| ||||| || || || | | Sbjct 435537 CCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGAC 435596 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || |||||||| || || || || | |||||| || || | || Sbjct 435597 AAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGGA 435656 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||||| ||| |||| | |||| | | | |||||||| | ||||| Sbjct 435657 ATTCCCTCCTTGTCC-TGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCAC 435715 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | |||||||| ||||| || | |||||||||||||| |||||| Sbjct 435716 TTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATT 435764 Score = 104 bits (114), Expect = 3e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | ||||| || | || |||||| ||||| || || || | | Sbjct 435993 CCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGAC 436052 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || |||||||| || || || || | |||||| || || | || Sbjct 436053 AAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGGA 436112 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||||| ||| |||| | |||| | | | |||||||| | ||||| Sbjct 436113 ATTCCCTCCTTGTCC-TGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCAC 436171 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | |||||||| ||||| || | |||||||||||||| ||||| || Sbjct 436172 TTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATATT 436222 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | ||| | |||||||| | ||| |||||| || |||||||| || | | Sbjct 434853 CCTCCCCTGAGACGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 434912 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || |||||||| || || || || | ||||||||||| | || Sbjct 434913 AAAGTGCGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAAACGCTGCTGGTCTGGGGGG 434972 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||||||| ||| || || | || | | |||||| | ||| || Sbjct 434973 ATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACC 435032 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | || ||||| || || || || ||||| |||||||| |||||| Sbjct 435033 TCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCATT 435080 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 23275152 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 23275093 Query 57066 ATACTACCGAGGA--TTGAATA 57085 |||||| |||||| ||||||| Sbjct 23275092 ATACTATCGAGGACGTTGAATA 23275071 >seq17434 Length=8399593 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||||||| ||| || ||||| |||||||||| ||||| || | || || Sbjct 1558150 CACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTC 1558091 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 | ||||| ||||| || || | |||||||| || | || | | || |||||| Sbjct 1558090 CAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 1558031 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||| || ||||| | | | || || || ||| || || | |||||||| || Sbjct 1558030 GATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 1557971 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || || || ||||||||||| Sbjct 1557970 ACCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||| ||| | ||||| || | | ||| |||||| ||||||||||||||||||||| | Sbjct 987580 ATGTAAACATCTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 987639 Query 57055 TACTCACCACTATACTACCGAGGAT 57079 |||| |||||||||||| ||||||| Sbjct 987640 TACTAACCACTATACTATCGAGGAT 987664 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4666226 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4666167 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 4666166 ATACTATCGAGGA 4666154 >seq17438 Length=17193109 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| |||| || |||||| || || ||||| || | ||| || || | Sbjct 16961292 ACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 16961351 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || || | |||||||| || | || | | |||||| Sbjct 16961352 ATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTT 16961411 Query 42113 GTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| | || | | | | | | | | ||||| | ||||| || | |||| Sbjct 16961412 GTCC-TGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCACCTCCAAGGTGA 16961470 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 |||| || || || || ||||| ||||||||||||||| || Sbjct 16961471 TGGTCTTCCCGGTGAGTGTCTTCACAAAGATTTGCATTGTC 16961511 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060 |||| ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| | Sbjct 7753976 AATTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAA 7754035 Query 57061 CCACTATACTACCGAGGA 57078 ||||||||||| |||||| Sbjct 7754036 CCACTATACTATCGAGGA 7754053 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 7752925 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 7752866 Query 57065 TATACTACCGAGGATTG 57081 ||||||| |||||| || Sbjct 7752865 TATACTATCGAGGACTG 7752849 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/81 (84%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 9348272 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 9348331 Query 57066 ATACTACCGAGGA--TTGAAT 57084 |||||| |||||| |||||| Sbjct 9348332 ATACTATCGAGGATGTTGAAT 9348352 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 ||| | ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| Sbjct 7753181 AAAGTCTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTA 7753122 Query 57060 ACCACTATACTACCGAGGA 57078 |||||||||||| |||||| Sbjct 7753121 ACCACTATACTATCGAGGA 7753103 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 7753594 TTGTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 7753535 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 7753534 ACTATACTATCGAGGA 7753519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 7764945 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 7765004 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 7765005 ATACTATCGAGGAT 7765018 >seq17431 Length=5172618 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 2186008 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 2185949 Query 57066 ATACTACCGAGGATTG 57081 |||||| ||||||||| Sbjct 2185948 ATACTATCGAGGATTG 2185933 >seq14924 Length=5632 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/81 (84%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1920 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1979 Query 57066 ATACTACCGAGGA--TTGAAT 57084 |||||| |||||| |||||| Sbjct 1980 ATACTATCGAGGATGTTGAAT 2000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543094379609600