Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq17434 145 8e-30 >seq17434 Length=8399593 Score = 145 bits (160), Expect = 8e-30 Identities = 457/703 (65%), Gaps = 10/703 (1%) Strand=Plus/Minus Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGG---CCGACTCCATCTCCGGAATT 93984 || || ||||| ||||||||||| | || || || |||| || || || ||| Sbjct 1623866 CCGCAAATGTCGTCGTGTTTCCTTTTAAC---CATGGTCTCCGATTCGATTGAGGGCATT 1623810 Query 93985 TTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGT 94044 ||| | | || | | || || | ||||| ||| ||| || || |||||| | | Sbjct 1623809 TTCAAATCCGTCGAACAATGCGCCATGATCTCCAAAGCCGCTGGTGGCATCGGGCTGAAC 1623750 Query 94045 GTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGC 94104 || || | ||||||| || ||| || | || || |||||||| || || || Sbjct 1623749 GTTCATTGTATTCGTGCCAAAGGCACCTCGATTTGTGGCACGAATGGCACTTCGAATGGG 1623690 Query 94105 CTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGG 94164 || || || ||||| || || ||||| || | ||| ||||| ||||| |||||||| || Sbjct 1623689 CTGGTGCCAATGCTGCGTGTATTCAATAATGTGGCACGCTATGTGGATCAGGGTGGCGGT 1623630 Query 94165 AGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTC 94224 | | | |||| | || || ||||| | ||||| ||||| |||| | | || Sbjct 1623629 AAGCGACCGGGTGCATTTGCCATCTATTTGGAGCCGTGGCATTCGGATATATTAGAATTT 1623570 Query 94225 ATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCT 94284 || || || || ||| ||||| || | | |||| | || || || || || Sbjct 1623569 ATGGATTTGAAGAAAAACACGGGCAAAGAGGAGCATCGGGCACGTGAGCTGTTTTATGCC 1623510 Query 94285 CTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTT 94344 | ||| | || || || ||||||||||||||||| || | ||| || | Sbjct 1623509 TTATGGATACCTGATCTGTTTATGAAACGCGTCGAAGCCAATGAGGATTGGTCCCTGATG 1623450 Query 94345 TGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCG-CG-TTTTGAAGACTTGT 94402 || || || | |||||||| || || ||||| || || || |||||| | ||| Sbjct 1623449 TGCCCACATAAGTGTCCCGGCCTCCAAGATGTTTGGGG--CGACGATTTTGAGAAACTGT 1623392 Query 94403 ATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGG 94462 | | || ||||| ||||||| || | || || | ||| | || ||| Sbjct 1623391 ACGTTCAATACGAGAAAGAGGGCAAAGCGAATCGAGTAATTAAAGCTCAAACACTTTGGT 1623332 Query 94463 ATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTG 94522 | ||| | || | |||||||||||| || || || ||||| ||||||||||||| Sbjct 1623331 TTGCCATCATTGAAGCACAGGTGGAGACTGGCACACCTTACATGCTGTTCAAGGACTCAT 1623272 Query 94523 TCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCG 94582 |||| |||| ||| ||||| | | || ||||| || ||||| ||||| | Sbjct 1623271 GCAACCGCAAGAGCAATCAGCAAAATGTGGGCACCATCAAATGCAGTAATCTATGCACTG 1623212 Query 94583 AGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAA 94625 | |||||||||||| | | || || || ||||| ||||| || Sbjct 1623211 AAATTGTCGAGTATTCGGCACCCGATGAAATTGCCGTGTGCAA 1623169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494615350342400