Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq17434 284 1e-71 seq17440 86.0 6e-12 seq17436 82.4 8e-11 >seq17434 Length=8399593 Score = 284 bits (314), Expect = 1e-71 Identities = 1197/1860 (64%), Gaps = 44/1860 (2%) Strand=Plus/Plus Query 152688 ACGGTAAACTGTTGTGTGTGCGCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTTTTG 152747 ||||| |||||| | | || || ||||| ||||| | ||||||||| ||||| || Sbjct 1622248 ACGGTGAACTGTATGGCATTTGCAGCCGGCTTCGTGCGAAGATAATACATTCCCGTCTTA 1622307 Query 152748 AGGCCGCAGCGCCACGAGTAATTGTGAATCGAAGTCATCACAGCGTACGTCGGTTGCGCC 152807 || ||| |||||||||| || ||||| |||| | || | || | ||| Sbjct 1622308 AGACCGGCTTTCCACGAGTAAAAATGGATCGATGTCAGTTTGCCATAGTTGGGCTCAGCC 1622367 Query 152808 ACGAACAGATTAAACGATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCA 152867 || | || ||||| || || ||||| ||||| || || ||||| ||||| | Sbjct 1622368 ACATGTATGTTGAACGACTGACTTTGATCAATGAATGCCCCGCGATCGGCTGCCATTTTG 1622427 Query 152868 ATCATGCGTTTTGCCTTCATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTATCCGGT 152927 ||| | ||| | || ||||| |||| || |||| || | || | | ||| Sbjct 1622428 ATCGTTGTTTTCACGGATATTTCCCACACGGTCTTATACAGATCCCTCACATTTTTTGGT 1622487 Query 152928 ATACCTTCAATGTTCTGAATAGAGCCCTTGTGTG-CAAAAATAGCGTTTCGT-ATTTCGG 152985 || ||| ||||| || || || || | | || | | || | ||| | || || Sbjct 1622488 ATGGATTCGATGTTTTGTATTGATCC-TCGACTGGCGATTATTT-GATTCTTCATATCAT 1622545 Query 152986 GCGTGTACACGTTCAGTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACT 153045 ||| || ||| | | | ||| | ||| | || || ||||| || |||| Sbjct 1622546 CATCCCACAAGTCCAGCTCCGTTAAATCACGCAACAAATGATGATTCACCACCTGGAACT 1622605 Query 153046 CGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTAT 153105 | || | || ||| |||| || | || || | || ||||| ||||| |||| Sbjct 1622606 CACCGGACAGCACGCGTCGGGTGTAGATGTTTGAGGTATACGGCTCAAACGATTCATTAT 1622665 Query 153106 TGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCA 153165 |||| | |||||||||||| | |||||| |||||| ||| || | || |||||| |||| Sbjct 1622666 TGCCCATTATTTGAGCCGTAGATGCGGTTGGCATGGGCGCAACAAGCAGAGAATTGCGCA 1622725 Query 153166 AGCCGTGCGC-TCGAATGTCGTC--CTTCAACGCCTGCCAATCCCACAGCGCCGACGGTG 153222 || ||| | | || ||| | ||| | || | ||| ||||| || | | |||| Sbjct 1622726 CACCATGCTCCTTGA---TCGACAGCTTAAGCGAGTTCCAGTCCCAGAGATCGGTTGGTG 1622782 Query 153223 TCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTAC 153282 || | |||||| ||||||||||| | || || | ||||| || | | | || Sbjct 1622783 TCTTGCCCCACATATCGTACTGTAAGATACCCTTGCTAACTGGACTTCCTGGATAGGTTT 1622842 Query 153283 TGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGG 153342 ||| || || |||||||| ||||||||| || || || |||||| | || |||| Sbjct 1622843 CATAGGGTCCTTCCTTTTGGGCCAATTCGCAGCTGGCTTCCAGTGCGCCAAAATAGATGG 1622902 Query 153343 TTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATG-CGCAGC 153401 |||| |||||||| ||| | || || || ||||||||||| || || ||| |||| Sbjct 1622903 TTTCAAAGATTTGTTGATTTAAAAGTGCGGCCTCTTCGCTCTCATAAGG-ATGACGCATT 1622961 Query 153402 AGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTG 153461 || | || || || || | || || | ||| | || ||||||||||| ||| Sbjct 1622962 AGAATCAATGCATCCGCGAATCCTTGCACACCAATACCAATGGGTCGATGGCGAAAATTG 1623021 Query 153462 CTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGC 153521 | | || || | ||||||| ||| || || ||||| || | || Sbjct 1623022 GATTTCTTTGCCTCCGGAAGCGGATAGTAGTTGATGTCAATTATTTTATTCAAATTCTTG 1623081 Query 153522 ACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACG-CG 153580 || ||| || | | || ||||||| ||| || || || | ||| |||| | Sbjct 1623082 GTTACTGTTTTGGTGACTTCTTTCAGTTTCTTGAAGTCGTACGTTTTGTCG--GACGTCA 1623139 Query 153581 TACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCT 153640 | ||| |||| ||||| || || | ||| || ||||| | || |||| || || Sbjct 1623140 CAAACAT--GTTCAATGCAATCGATGCTAAATTGCACACGGCAATTTCATCGG-GT-GCC 1623195 Query 153641 G--TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGA 153698 | |||| || || || | ||| || || |||||||| ||| ||||| |||||||||| Sbjct 1623196 GAATACTCGACAATTTCAGTGCATAGATTACTGCATTTGATGGTGCCCACATTTTGCTGA 1623255 Query 153699 TTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGC 153758 ||||| ||||| ||||| | ||| ||||| |||||||| ||| ||| ||||| || || Sbjct 1623256 TTGCTCTTGCGGTTGCATGAGTCCTTGAACAGCATGTAAGGTGTGCCAGTCTCCACCTGT 1623315 Query 153759 GTTTCGACGAT---AAACCTATGCAGGTCCTGCGCT---CGCACCCGCTGCCGATAGCGG 153812 | ||| | ||| ||||| | || || ||| || || | || | | Sbjct 1623316 GCTTCAATGATGGCAAACCAA---AGTGTTTGAGCTTTAATTACTCGAT-TCGCT--TTG 1623369 Query 153813 CCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGG 153872 ||||| |||||||| | |||||||| |||||| |||||||| | || |||| Sbjct 1623370 CCCTCTTTCTCGTATTGAACGTACAGTTTCTCAAAATCGTCGCCCCAAACATCTTGGAGG 1623429 Query 153873 CCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATG 153932 |||||||||| ||| || |||||||| ||||| || | ||| | ||||||| ||| Sbjct 1623430 CCGGGACACTTATGTGGGCACATCAGGGACCAATCCTCATTGGCTTCGACGCGTTTCATA 1623489 Query 153933 AACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCC--TTGCAATCCTCCGCGC 153990 |||||||| || | ||| | || || | || || || ||| ||| ||||| || Sbjct 1623490 AACAGATCAGGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGC--TCCTCTTTGC 1623547 Query 153991 CCATGTTGCGTTTCAGATTGA-GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAG 154049 || |||| |||| || | | ||| | || || | ||||| || || | ||| Sbjct 1623548 CCGTGTTTTTCTTCAAATCCATAAATTCTA-ATATATCCGAATGCCACGGCTCCAAATAG 1623606 Query 154050 ACGGCCAGGGCACCTTTACGCTTTCCG---CCCTGATCGACGTGGCGCACCATATTGTTG 154106 | ||| | ||||| ||||| ||| |||||||| || | ||| ||| ||| ||| Sbjct 1623607 ATGGCAAATGCACCCGGTCGCTTACCGCCACCCTGATCCACATAGCGTGCCACATTATTG 1623666 Query 154107 AAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTG 154166 || || |||| ||| || |||| || | | ||||| || || | ||| | || Sbjct 1623667 AATACACGCAGCATTGGCACCAGCCCATTCGAAGTGCCATTCGTGCCACAAATCGAGGTG 1623726 Query 154167 CCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCA 154226 || ||| || | ||| ||||| | || ||||| || || || || || Sbjct 1623727 CCTTTGGCACGAATACAATGAACGTTCAGCCCGATGCCACCAGCGGCTTTGGAGATCATG 1623786 Query 154227 GCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAG 154286 ||||| | | | | || | ||||| || || |||| | | | | | | Sbjct 1623787 GCGCATTGTTCGACGGATTTGAAAATGCCCTCAATCGAATCGGAGACCATGGTTAAAAGG 1623846 Query 154287 AAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGC 154346 |||||||| ||||||||||| || | || | ||| || || || || ||| Sbjct 1623847 AAACACGACGACATTTGCGGACGATTTGTGGCAGCGGCAAAAAGTGTTGGCGATGCATGC 1623906 Query 154347 GTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCG 154406 || || ||| || || || || || | || | || ||||||||||| Sbjct 1623907 GTGAAGTACCTTTCAGACAGCAGATTATAGGTCTCCACAGCAGCATCAATATCATCGCCA 1623966 Query 154407 TGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCA 154466 || || || | || ||||||||| ||||||||||| ||||| || || | | | | | Sbjct 1623967 TGTATCCCAATCGAGACGCGCATCAGCATGTGCTGTGGACGCTCTGCTATTTTGTGATTT 1624026 Query 154467 ATCTTCAAGAGATATCCAT-TTTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAATC 154525 ||||||| | ||| | || ||||| || || | || ||||| || || |||| || Sbjct 1624027 ATCTTCAGCAAATA-CGATCGCTCGAGCGTCTTAAATCCAAAATAATTATAGCCAAAGTC 1624085 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||| || ||||||||||| || | ||| || || || | ||| || || | Sbjct 1558136 TTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCAATTGCTTGCCAG 1558077 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||||| |||||| || || ||||| || ||||||||||| ||| || ||| | Sbjct 1558076 CAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGA 1558017 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | ||| | ||| || | || || ||||| | || | || ||||| || || |||| Sbjct 1558016 CATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTT 1557957 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 1557956 TAACGAAGATTTGCAT 1557941 >seq17440 Length=24565398 Score = 86.0 bits (94), Expect = 6e-12 Identities = 226/339 (67%), Gaps = 7/339 (2%) Strand=Plus/Plus Query 57110 CAATGCCGATGATGCCGCAGCCGAGACGGCCGCCCGAGTTGCCGGTGGTCTTGCTCAGCG 57169 ||||||| || | |||||||| | || |||| | || || || |||||||||||| Sbjct 18410031 CAATGCCAATAACACCGCAGCCAATGCGAGCGCCAGCATTTCCAGTTGTCTTGCTCAGCT 18410090 Query 57170 GATGTTCGGTGAGGCCGAGATCGTCGCGCTTCGCGTGAACCACCAGACTGCGGCCGACGA 57229 || || ||| | ||| ||| | | || || || || | |||| |||| | Sbjct 18410091 CGTGGCCGCCCTTGCCCAAATCATCGGGATCAGCATGGACGACAACTGTGCGTCCGATAA 18410150 Query 57230 CGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGG-CG 57288 ||| || | || || | ||| ||| | || ||| | ||| || ||| | ||| | Sbjct 18410151 TGCTGTTGGCACCAAACAACGTGATCTCTTTATCGGTGATGTTAAC--CGGAGTGGGTCC 18410208 Query 57289 TTGGACACTTTGGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGA 57348 | | || | ||| | ||||||||| ||||| | || || ||| | || | || Sbjct 18410209 ATTGCCA--GTAGCCGTTATGTTGCCCAAATCGCCTAGATGACGAACGCCATCGGTTGGT 18410266 Query 57349 GCGCCGTGTTCGCTGCCGGTG-GGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCT 57407 ||||| || || || | |||| || ||||||||| |||| |||| |||| ||||| | Sbjct 18410267 GCGCCATGCTC-CTTCTGGTGAGGATTAAAGTGCGGCCCCGACGACATGCATCCGTTTGT 18410325 Query 57408 GGTGTCGCCGAACTCGTGAACGTGAAATCCGTGCAGGCC 57446 ||||||| || || || || || || ||||||| ||| Sbjct 18410326 ATTGTCGCCAAATTCATGCACATGGAAGCCGTGCAAGCC 18410364 >seq17436 Length=11997470 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| || | || || |||| | |||||||| || |||||||| || Sbjct 6692167 GCCACCACGCAGGCGGAGCACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGA 6692108 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || || || || || |||| | |||| |||||||| || || || || Sbjct 6692107 AAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGG 6692048 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | ||| |||| | |||||| Sbjct 6692047 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCAC 6691988 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||||| ||| || || ||||||||||| Sbjct 6691987 CTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 6691940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496154214796800