Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq11536 711 0.0 >seq11536 Length=2982 Score = 711 bits (788), Expect = 0.0 Identities = 698/897 (78%), Gaps = 4/897 (0%) Strand=Plus/Plus Query 52485 TACCATATCCGAGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCACG 52544 || ||| | || || || || | ||||||||||| |||||| ||||| | | || Sbjct 1969 TATCATCTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCAA 2028 Query 52545 TACAGCGGCATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGC 52604 |||||||| ||||||||||| | | ||||||||||||||||||||| ||||||||| Sbjct 2029 TACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTGT 2088 Query 52605 CTGTGGGACATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGAT 52664 |||||||| |||||||| || ||||||||||||||||| ||||| || || ||||||||| Sbjct 2089 CTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGAT 2148 Query 52665 GTGGACAAGTGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGGT 52724 ||||| || ||||||||||||| ||| | ||||||||||||||| || || || || Sbjct 2149 GTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGGC 2208 Query 52725 TTCGGGGGCACAGAGCCGCGGATGACCTTTAATGCGTACCTGTCACAACAGCGTAAGGCG 52784 || || ||||| |||||||| || |||| ||||||||||||| | ||||||||||||| Sbjct 2209 TTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGCG 2268 Query 52785 TGGGACGTTCTCAGTGATTTCTGCTCGGCGATGCGCTGTATGCCGGTATGGAACGGCCAG 52844 ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2269 TGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGTATGGAACGGGCAG 2328 Query 52845 ACGCTGACGTTCGTTCAGGACAGCCCGTCGGATGTGGTGTGGCCGTACACCAACAGTGAT 52904 |||||||||||||| |||||| | ||||||||| | |||| | || | | |||| || Sbjct 2329 ACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTATAACCGCAGTAAT 2388 Query 52905 GTGGTGGTGGATGATAACGGCGTGGGGTTTCGCTACAGCTTCAGCGCCCTGAAGGACCGC 52964 |||||| || ||| | |||| | ||| |||||||||||||||||||||||||||||| Sbjct 2389 GTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCCCTGAAGGACCGC 2448 Query 52965 CACACGGCGGTGGAGGTGAATTACACCGACCCGCAGAACGGCTGGCAGACCTCCACGGAA 53024 || | || || |||||||| | | |||||| | ||||||||| |||| | || || Sbjct 2449 CATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAGACGGCGACAGAG 2508 Query 53025 CTGGTGGAAGACCCGGAAGCCATACTGCGCTACGGGCGCAACCTGCTGAAGATGGATGCG 53084 || || ||||| || | ||||| || ||||| || || | |||||||||||| Sbjct 2509 CTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACGAAGATGGATGCC 2568 Query 53085 TTCGGTTGCACCAGTCGCGGTCAGGCCCACCGTGCCGGGCTGTGGGTGATAAAGACCGGA 53144 || || || ||||| || || ||||| ||||| |||||||||||| |||| || || | | Sbjct 2569 TTTGGCTGTACCAGCCGGGGGCAGGCACACCGCGCCGGGCTGTGGCTGATTAAAACAGAA 2628 Query 53145 CTGCTGGAAACGCAGACGGTGGATTTCACGCTCGGGTCACAGGGGCTGCGTCACACACCC 53204 ||||||||||||||||| |||||||||| |||| || | ||||| || || ||| Sbjct 2629 CTGCTGGAAACGCAGACCGTGGATTTCAGCGTCGGCGCAGAAGGGCTTCGCCATGTACCG 2688 Query 53205 GGTGACATTATTGAAATCTGTGATAACGACTATGCCGGGACCATGACCGGCGGACGTGTC 53264 || || ||||||||||||| ||| | ||||||||||| | || ||||| || ||||| Sbjct 2689 GGCGATGTTATTGAAATCTGCGATGATGACTATGCCGGTATCAGCACCGGTGGTCGTGTG 2748 Query 53265 CTGTCCATCGATGCCGCCAG--CCGCACCCTGACACTGGACCGTGAGGTGACCCTGCCGG 53322 ||| | | || | ||||| ||| || ||||| || |||||||| | || ||||| Sbjct 2749 CTGGCGGT-GA-ACAGCCAGACCCGGACGCTGACGCTCGACCGTGAAATCACGCTGCCAT 2806 Query 53323 AGACCGGTGCCGCCACGGTGAACCTGATTAACGGCAGCGGTAAGCCGGTGAGCGTGG 53379 ||||| |||| | | | |||| || |||| || || || ||||| ||||||| Sbjct 2807 CCTCCGGTACCGCGCTGATAAGCCTGGTTGACGGAAGTGGCAATCCGGTCAGCGTGG 2863 Score = 489 bits (542), Expect = 6e-134 Identities = 493/636 (78%), Gaps = 6/636 (1%) Strand=Plus/Plus Query 52485 TACCATATC-CGAGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCAC 52543 || ||| || || || || || | ||||||||||| |||||| ||||| | | || Sbjct 1 TATCATCTCGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCA 60 Query 52544 GTACAGCGGCATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTG 52603 |||||||| ||||||||||| | | ||||||||||||||||||||| ||||||||| Sbjct 61 ATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTG 120 Query 52604 CCTGTGGGACATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGA 52663 |||||||| |||||||| || ||||||||||||||||| ||||| || || |||||||| Sbjct 121 TCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 180 Query 52664 TGTGGACAAGTGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGG 52723 |||||| || ||||||||||||| ||| | ||||||||||||||| || || || || Sbjct 181 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 240 Query 52724 TTTCGGGGGCACAGAGCCGCGGATGACCTTTAATGCGTACCTGTCACAACAGCGTAAGGC 52783 || || ||||| |||||||| || |||| ||||||||||||| | |||||||||||| Sbjct 241 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGC 300 Query 52784 GTGGGACGTTCTCAGTGATTTCTGCTCGGCGATGCGCTGTATGCC-GGTATGGAACGGCC 52842 |||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||| | Sbjct 301 GTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGGTATGGAACGGGC 360 Query 52843 AGACGCTGACGTTCGTTCAGGACAGCCCGTCGGATGTGGTGTGGCCGTACACCAACAGTG 52902 |||||||||||||||| || ||| | ||||||||| | |||| | || | | | | Sbjct 361 AGACGCTGACGTTCGTGCATGACCGACCGTCGGATAAGACGTGGACCTATAACCTCTTTA 420 Query 52903 ATGTGGTGGTGGATGATAACGGCGTGGGGTTTCGCTACAGCTTCAGCGCCCTGAAGGACC 52962 ||||| || || ||| | |||| | || |||||||||||| ||||||||| |||| Sbjct 421 ATGTGATGATGCCGGATGATGGCGCGCCTTTCCGCTACAGCTTCTTCGCCCTGAATGACC 480 Query 52963 GCCACACGGCGGTGGAGGTGAATTACACCGACCCGCAGAACGGCTGGCAGACCTCCACGG 53022 |||| | || || |||||||| | | ||||| | ||||||||| |||| | || | Sbjct 481 GCCATAATGCCGTTGAGGTGAACTGGATTGACCCAAACAACGGCTGGGAGACTGCGACAG 540 Query 53023 AACTGGTGGAAGACCCGGAAGCCATACTGC--GCTACGGGCGCAACCTGCTGAAGATGGA 53080 | || || ||| | || | ||||| ||| | ||| | || || | |||||||| Sbjct 541 AGCTTGTTGAATATACGCATGCCAT--TGCCTGTTACAGTCGTAATGTTACTAAGATGGA 598 Query 53081 TGCGTTCGGTTGCACCAGTCGCGGTCAGGCCCACCG 53116 ||| || || || ||||| || || ||||| ||||| Sbjct 599 TGCCTTTGGCTGTACCAGCCGGGGGCAGGCACACCG 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198707639123520