Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_011357.1
Length=62147
Score E
Sequences producing significant alignments: (Bits) Value
seq11536 711 0.0
>seq11536
Length=2982
Score = 711 bits (788), Expect = 0.0
Identities = 698/897 (78%), Gaps = 4/897 (0%)
Strand=Plus/Plus
Query 52485 TACCATATCCGAGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCACG 52544
|| ||| | || || || || | ||||||||||| |||||| ||||| | | ||
Sbjct 1969 TATCATCTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCAA 2028
Query 52545 TACAGCGGCATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGC 52604
|||||||| ||||||||||| | | ||||||||||||||||||||| |||||||||
Sbjct 2029 TACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTGT 2088
Query 52605 CTGTGGGACATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGAT 52664
|||||||| |||||||| || ||||||||||||||||| ||||| || || |||||||||
Sbjct 2089 CTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGAT 2148
Query 52665 GTGGACAAGTGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGGT 52724
||||| || ||||||||||||| ||| | ||||||||||||||| || || || ||
Sbjct 2149 GTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGGC 2208
Query 52725 TTCGGGGGCACAGAGCCGCGGATGACCTTTAATGCGTACCTGTCACAACAGCGTAAGGCG 52784
|| || ||||| |||||||| || |||| ||||||||||||| | |||||||||||||
Sbjct 2209 TTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGCG 2268
Query 52785 TGGGACGTTCTCAGTGATTTCTGCTCGGCGATGCGCTGTATGCCGGTATGGAACGGCCAG 52844
||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2269 TGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGTATGGAACGGGCAG 2328
Query 52845 ACGCTGACGTTCGTTCAGGACAGCCCGTCGGATGTGGTGTGGCCGTACACCAACAGTGAT 52904
|||||||||||||| |||||| | ||||||||| | |||| | || | | |||| ||
Sbjct 2329 ACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTATAACCGCAGTAAT 2388
Query 52905 GTGGTGGTGGATGATAACGGCGTGGGGTTTCGCTACAGCTTCAGCGCCCTGAAGGACCGC 52964
|||||| || ||| | |||| | ||| ||||||||||||||||||||||||||||||
Sbjct 2389 GTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCCCTGAAGGACCGC 2448
Query 52965 CACACGGCGGTGGAGGTGAATTACACCGACCCGCAGAACGGCTGGCAGACCTCCACGGAA 53024
|| | || || |||||||| | | |||||| | ||||||||| |||| | || ||
Sbjct 2449 CATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAGACGGCGACAGAG 2508
Query 53025 CTGGTGGAAGACCCGGAAGCCATACTGCGCTACGGGCGCAACCTGCTGAAGATGGATGCG 53084
|| || ||||| || | ||||| || ||||| || || | ||||||||||||
Sbjct 2509 CTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACGAAGATGGATGCC 2568
Query 53085 TTCGGTTGCACCAGTCGCGGTCAGGCCCACCGTGCCGGGCTGTGGGTGATAAAGACCGGA 53144
|| || || ||||| || || ||||| ||||| |||||||||||| |||| || || | |
Sbjct 2569 TTTGGCTGTACCAGCCGGGGGCAGGCACACCGCGCCGGGCTGTGGCTGATTAAAACAGAA 2628
Query 53145 CTGCTGGAAACGCAGACGGTGGATTTCACGCTCGGGTCACAGGGGCTGCGTCACACACCC 53204
||||||||||||||||| |||||||||| |||| || | ||||| || || |||
Sbjct 2629 CTGCTGGAAACGCAGACCGTGGATTTCAGCGTCGGCGCAGAAGGGCTTCGCCATGTACCG 2688
Query 53205 GGTGACATTATTGAAATCTGTGATAACGACTATGCCGGGACCATGACCGGCGGACGTGTC 53264
|| || ||||||||||||| ||| | ||||||||||| | || ||||| || |||||
Sbjct 2689 GGCGATGTTATTGAAATCTGCGATGATGACTATGCCGGTATCAGCACCGGTGGTCGTGTG 2748
Query 53265 CTGTCCATCGATGCCGCCAG--CCGCACCCTGACACTGGACCGTGAGGTGACCCTGCCGG 53322
||| | | || | ||||| ||| || ||||| || |||||||| | || |||||
Sbjct 2749 CTGGCGGT-GA-ACAGCCAGACCCGGACGCTGACGCTCGACCGTGAAATCACGCTGCCAT 2806
Query 53323 AGACCGGTGCCGCCACGGTGAACCTGATTAACGGCAGCGGTAAGCCGGTGAGCGTGG 53379
||||| |||| | | | |||| || |||| || || || ||||| |||||||
Sbjct 2807 CCTCCGGTACCGCGCTGATAAGCCTGGTTGACGGAAGTGGCAATCCGGTCAGCGTGG 2863
Score = 489 bits (542), Expect = 6e-134
Identities = 493/636 (78%), Gaps = 6/636 (1%)
Strand=Plus/Plus
Query 52485 TACCATATC-CGAGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCAC 52543
|| ||| || || || || || | ||||||||||| |||||| ||||| | | ||
Sbjct 1 TATCATCTCGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCA 60
Query 52544 GTACAGCGGCATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTG 52603
|||||||| ||||||||||| | | ||||||||||||||||||||| |||||||||
Sbjct 61 ATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTG 120
Query 52604 CCTGTGGGACATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGA 52663
|||||||| |||||||| || ||||||||||||||||| ||||| || || ||||||||
Sbjct 121 TCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 180
Query 52664 TGTGGACAAGTGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGG 52723
|||||| || ||||||||||||| ||| | ||||||||||||||| || || || ||
Sbjct 181 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 240
Query 52724 TTTCGGGGGCACAGAGCCGCGGATGACCTTTAATGCGTACCTGTCACAACAGCGTAAGGC 52783
|| || ||||| |||||||| || |||| ||||||||||||| | ||||||||||||
Sbjct 241 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGC 300
Query 52784 GTGGGACGTTCTCAGTGATTTCTGCTCGGCGATGCGCTGTATGCC-GGTATGGAACGGCC 52842
|||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 301 GTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGGTATGGAACGGGC 360
Query 52843 AGACGCTGACGTTCGTTCAGGACAGCCCGTCGGATGTGGTGTGGCCGTACACCAACAGTG 52902
|||||||||||||||| || ||| | ||||||||| | |||| | || | | | |
Sbjct 361 AGACGCTGACGTTCGTGCATGACCGACCGTCGGATAAGACGTGGACCTATAACCTCTTTA 420
Query 52903 ATGTGGTGGTGGATGATAACGGCGTGGGGTTTCGCTACAGCTTCAGCGCCCTGAAGGACC 52962
||||| || || ||| | |||| | || |||||||||||| ||||||||| ||||
Sbjct 421 ATGTGATGATGCCGGATGATGGCGCGCCTTTCCGCTACAGCTTCTTCGCCCTGAATGACC 480
Query 52963 GCCACACGGCGGTGGAGGTGAATTACACCGACCCGCAGAACGGCTGGCAGACCTCCACGG 53022
|||| | || || |||||||| | | ||||| | ||||||||| |||| | || |
Sbjct 481 GCCATAATGCCGTTGAGGTGAACTGGATTGACCCAAACAACGGCTGGGAGACTGCGACAG 540
Query 53023 AACTGGTGGAAGACCCGGAAGCCATACTGC--GCTACGGGCGCAACCTGCTGAAGATGGA 53080
| || || ||| | || | ||||| ||| | ||| | || || | ||||||||
Sbjct 541 AGCTTGTTGAATATACGCATGCCAT--TGCCTGTTACAGTCGTAATGTTACTAAGATGGA 598
Query 53081 TGCGTTCGGTTGCACCAGTCGCGGTCAGGCCCACCG 53116
||| || || || ||||| || || ||||| |||||
Sbjct 599 TGCCTTTGGCTGTACCAGCCGGGGGCAGGCACACCG 634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 198707639123520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |