Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_011588.1 Length=127615 Score E Sequences producing significant alignments: (Bits) Value seq17439 107 2e-18 >seq17439 Length=18325388 Score = 107 bits (118), Expect = 2e-18 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 69531 AATGGTTATGTGTTTTTCTTTTACCGAGAAGTGGCCGTCGAGCATATTAACTGCGGAAAG 69590 ||||| || ||||| ||||||| ||| ||| || || | ||| | || |||| || ||| Sbjct 3625686 AATGGCTACGTGTTCTTCTTTTTCCGCGAACTGTCCATGGAGTACATGAACTTTGGCAAG 3625745 Query 69591 ACCATTTATTCGAGAGTCGCTCGTGTCTGCAAAAATGATCACGGCGGCCCACATCGGTAC 69650 | | |||||| | || | |||||||||||| ||||||| ||||| || | | | | Sbjct 3625746 GCGGTCTATTCGCGTGTGGGTCGTGTCTGCAAGAATGATCGTGGCGGTCC-CTACAAT-C 3625803 Query 69651 TCGG--ATAAATGGACGTCATTTTTAAAGACTCGACTAAATTGTTCGGTGCCCGGCGAAT 69708 ||| | | ||||| || || | ||| | || || ||||| ||| |||||||||||| Sbjct 3625804 ACGGCAAGAGCTGGACATCGTTCCTCAAGGCGCGGCTCAATTGCTCGATGCCCGGCGAAT 3625863 Query 69709 TCCCCTTTTACTTTGACGAA 69728 | || || |||||||| ||| Sbjct 3625864 TTCCATTCTACTTTGATGAA 3625883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408156427907840