Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq17434 233 2e-56 >seq17434 Length=8399593 Score = 233 bits (258), Expect = 2e-56 Identities = 929/1457 (64%), Gaps = 40/1457 (3%) Strand=Plus/Minus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAA 123293 |||||||| || | |||||| | | || | || || ||||| ||| || || Sbjct 1623680 ATGCTGCGTGTATTCAATAATGTGGCACGCTATGTGGATCAGGGTGGCGGTAAGCGACCG 1623621 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 || || | || |||||| | || |||||||| ||| | | || ||| | |||| Sbjct 1623620 GGTGCATTTGCCATCTATTTGGAGCCGTGGCATTCGGATATATTAGAATTTATGGATTTG 1623561 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413 || |||| ||| || || | || || || |||| || || |||||| || Sbjct 1623560 AAGAAAAACACGGGCAAAGAGGAGCATCGGGCACGTGAGCTGTTTTATGCCTTATGGATA 1623501 Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGAT 123473 || ||| |||||||| |||||| ||| | | | | ||||| || ||||| || || Sbjct 1623500 CCTGATCTGTTTATGAAACGCGTCGAAGCCAATGAGGATTGGTCCCTGATGTGCCCACAT 1623441 Query 123474 CGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATAC 123533 |||||||||| | || |||| ||| | | ||||| | |||||| |||||| Sbjct 1623440 AAGTGTCCCGGCCTCCAAGATGTTTGGGGCGACGATTTTGAGAAACTGTACGTTCAATAC 1623381 Query 123534 GAGCGCGAAGGCAAACAG------GTTAGTCAGGTTCCGGCACGT-GATTTGTTCAAATT 123586 ||| || |||||| | || | | | | || ||| | | |||| Sbjct 1623380 GAGAAAGAGGGCAAAGCGAATCGAGTAATTAAAGCTCAAACACTTTGGTTTGCC------ 1623327 Query 123587 TATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAA 123646 || || ||| |||| || || || || || || |||||||| | ||| ||| | ||||| Sbjct 1623326 -ATCATTGAAGCACAGGTGGAGACTGGCACACCTTACATGCTGTTCAAGGACTCATGCAA 1623268 Query 123647 CAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 | | || | ||||||| || |||| || || ||||| |||||||| ||| | ||||| Sbjct 1623267 CCGCAAGAGCAATCAGCAAAATGTGGGCACCATCAAATGCAGTAATCTATGCACTGAAAT 1623208 Query 123707 TATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA 123766 | |||| || | ||||| || | |||||||| ||||| || |||||| |||| Sbjct 1623207 TGTCGAGTATTCGGCACCCGATGAAATTGCCGTGTGCAATTTAGCATCGATTGCATTGAA 1623148 Query 123767 -----TCGTTGCGTCG---AAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACA 123818 | || |||| |||||| | | ||| | | || ||| | || Sbjct 1623147 CATGTTTGTGACGTCCGACAAAACG-----TACGACTTCAAGAAACTGAAAGAAGTCACC 1623093 Query 123819 AAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAA 123878 ||||| ||| ||||||||||| ||||| || || | || | ||||| | ||| Sbjct 1623092 AAAACAGTAACCAAGAATTTGAATAAAATAATTGACATCAACTACTATCCGCTTCCGGAG 1623033 Query 123879 GCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGAC 123938 || || ||||| || |||| | || | || | ||||| || || || Sbjct 1623032 GCAAAGAAATCCAATTTTCGCCATCGACCCATTGGTATTGGTGTGCAAGGATTCGCGGAT 1622973 Query 123939 GCGTTTGTAATGCTGCG-CATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCA 123997 || || | | |||| ||| || || || ||||| || || | | ||| || Sbjct 1622972 GCATTGATTCTAATGCGTCAT-CCTTATGAGAGCGAAGAGGCCGCACTTTTAAATCAACA 1622914 Query 123998 AATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCA 124057 ||| ||||| || |||| ||||| |||| || ||||||||| | || ||| | Sbjct 1622913 AATCTTTGAAACCATCTATTTTGGCGCACTGGAAGCCAGCTGCGAATTGGCCCAAAAGGA 1622854 Query 124058 CGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACAT 124117 || | || |||| || | || || || | ||| ||||| || |||||||| || Sbjct 1622853 AGGACCCTATGAAACCTATCCAGGAAGTCCAGTTAGCAAGGGTATCTTACAGTACGATAT 1622794 Query 124118 GTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGAC 124177 |||| ||||| || || | |||||||||| | | || | || | Sbjct 1622793 GTGGGGCAAGACACCAACCGATCTCTGGGACTGGAACTCGCTTAAGCTGTCGATCAAGGA 1622734 Query 124178 GCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAAT 124237 ||| ||| |||| || || ||| | || ||| |||||| || ||| | || |||||||| Sbjct 1622733 GCATGGTGTGCGCAATTCTCTGCTTGTTGCGCCCATGCCAACCGCATCTACGGCTCAAAT 1622674 Query 124238 TTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTT 124297 | || || || ||||| || ||||||| || || | ||| ||||| ||| | Sbjct 1622673 AATGGGCAATAATGAATCGTTTGAGCCGTATACCTCAAACATCTACACCCGACGCGTGCT 1622614 Query 124298 AGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTT 124357 |||| || || || ||| | |||||||||||| || || || || | | | || Sbjct 1622613 GTCCGGTGAGTTCCAGGTGGTGAATCATCATTTGTTGCGTGATTTAACGGAGCTGGACTT 1622554 Query 124358 GTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGC 124417 || ||||| | ||| || |||| || || | || | || ||||| Sbjct 1622553 GTGGGATGATGATATGAAGAATCAAATAATCGCCAGTCGAGGATCAATACAAAACATCGA 1622494 Query 124418 TTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAATA 124473 || || || || | || | | | ||||| || |||||||||||||| | ||| Sbjct 1622493 ATCCATACCAAAAAATGTGAGGGATCTGTATAAGACCGTGTGGGAAATATCCGTGAAAAC 1622434 Query 124474 AACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTA 124533 |||||| || |||||| | ||| || || || | || ||||||||||| || || | Sbjct 1622433 AACGATCAA----AATGGCAGCCGATCGCGGGGCATTCATTGATCAAAGTCAGTCGTTCA 1622378 Query 124534 ACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGA 124593 || | ||| || || |||| ||| | | |||| || || | || |||||| Sbjct 1622377 ACATACATGTGGCTGAGCCCAACTATGGCAAACTGACATCGATCCATTTTTACTCGTGGA 1622318 Query 124594 GCAGCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTC 124653 ||| || || ||||| |||||||| | | || || ||||| || ||||||| | Sbjct 1622317 AAGCCGGTCTTAAGACGGGAATGTATTATCTTCGCACGAAGCCGGCTGCAAATGCCATAC 1622258 Query 124654 AATTTACCGTCGACAAA 124670 | || ||||||| |||| Sbjct 1622257 AGTTCACCGTCGCCAAA 1622241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451904663302400