Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq17438 150 2e-31 >seq17438 Length=17193109 Score = 150 bits (166), Expect = 2e-31 Identities = 294/426 (69%), Gaps = 14/426 (3%) Strand=Plus/Plus Query 175748 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 175807 || |||||||| || |||| ||| || || |||||||| || | | || ||||| | Sbjct 4176766 CCGGTGCCAATGCCCTCGGCGCCATTAACCAGAACCATCGGTATGATGGGTATATACCAA 4176825 Query 175808 TCTGGTTCAATCGCAC-GCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCGG 175866 ||| ||||| || | | |||||||| | ||| | |||| || |||||| || Sbjct 4176826 AGTGGCTCAAT-GCGCTGTCCATCATCTGTCTGATACTGCAGCAGTGGATCATCCAATGG 4176884 Query 175867 ATCAAAGATTTTACGAGCATCCTTGGTGAGTTT--TGTGAAGATGTACCTCGTTTGAGAC 175924 || | |||| ||| | || || || || |||||| || || | | | | Sbjct 4176885 ATGATAGATGAGACGGG--TCAGCGGCGACATTAATGTGAAAATATAACGAGC---ACTC 4176939 Query 175925 GCA---TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTG 175981 ||| |||||||| ||| | | ||| || || || ||||| | |||||| || | |||| Sbjct 4176940 GCACAATCTTTGCCGCCCGTCAAACGTGTACCGAACTGACCGCGTGGCTCCAGCAAATTG 4176999 Query 175982 ATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGAC 176040 |||||||||||||||| ||||| | ||||| || |||||||| ||| || || || || Sbjct 4177000 ATATTGTTTGAGCCCACATAGTTCTGCGCCAGATTCACAATCGTCATCTGC-AGCGACAC 4177058 Query 176041 TTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCAT 176100 || |||||||| ||||| ||| | || ||||| | ||| | ||| |||||||||| Sbjct 4177059 CTCGCCGTGATGATAGGCAGACATTTCGGCCACCGAACCCGATAGCTGAGCCACCTTCAC 4177118 Query 176101 CTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAG 176160 ||| ||| ||| | |||||||| |||| || || | ||| ||| ||||| Sbjct 4177119 CTCGCGCTTATCGTTACGCTTGAAGCACGTGAACATCACTTTGCGCTGGCCAGGTTTGAG 4177178 Query 176161 GCCGTC 176166 ||| || Sbjct 4177179 GCCATC 4177184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613373455430400