Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq17439 150 3e-31 seq17434 145 1e-29 >seq17439 Length=18325388 Score = 150 bits (166), Expect = 3e-31 Identities = 527/812 (65%), Gaps = 28/812 (3%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| |||||||| ||||| ||||| || || |||| || || ||||||||| || Sbjct 9056313 CACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCCATGAAAGTAAA 9056372 Query 159703 TGGGTTCTTCACGTGATAGCGCTT-CGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCA 159761 ||| ||||| || ||| || | || | ||||| || ||| ||| | || |||| Sbjct 9056373 TGGATTCTTTGTGTTATATATTTTACCGACA-CCGAGCTCCACCAACAAGCGATCGGCCA 9056431 Query 159762 CAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 | || || || || ||||| || |||| || || || | ||| | || || | | Sbjct 9056432 CGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCAGATTTACAGGCAAAG 9056491 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTT 159881 | || | |||||||||| |||||| || || || | || |||| || |||| Sbjct 9056492 CGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAGACGATCTCAATGATGCGTT 9056551 Query 159882 CGTACCCCGGCTTG--CCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTG 159939 | ||||| | | | | ||| || |||| | |||||||||||| || Sbjct 9056552 CA-----CGGCTGGGACGCTGCACCAGGTGCTGGAACATCATAACCGCAAAGTCGCAATG 9056606 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 ||| ||||| || || ||||||| |||||| || | | || || ||||| | ||||| Sbjct 9056607 CAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCATTAGGCCACG 9056666 Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGC 160059 | ||| ||||| || |||| |||||| |||||||| ||||| || || ||||| || Sbjct 9056667 CTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTTCGACGGCAGC 9056726 Query 160060 AAACGCCACGAGCCTCTCACCAAA---AGAGGCGTTGGTGTCATG-GGTCCACCTTTTGG 160115 || || | | | ||| ||||| | || |||| ||| |||| | Sbjct 9056727 GAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGG----ATGAAATCCAAGAGAGCG 9056782 Query 160116 CCCATTCAGCCTT---CTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGT 160172 |||| || ||||| |||| | || |||||| || | || || || | | Sbjct 9056783 CCCAGTCCGCCTTACGCTTTAC--AGC-CGGCATTGTTTCAATAGCATTGAAGAGATAAT 9056839 Query 160173 CCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCA 160232 | ||| | ||| ||| ||| | || ||| |||||| |||| ||| | Sbjct 9056840 CGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGAGTGTA 9056899 Query 160233 CATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCT 160292 |||| || ||||| |||||||| ||||| | |||||| | |||||| |||| Sbjct 9056900 CATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTTCCT 9056959 Query 160293 GTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCA 160352 | | || | | | ||||||| | ||||| | || |||| ||| || |||||||||| Sbjct 9056960 GGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAGCCA 9057019 Query 160353 ACACGTGAGAGATGAAATGTCTCTC-GTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACG 160411 |||| || || |||||||| | ||| | | |||| || | |||||| |||| | Sbjct 9057020 ACACATGTGAAATGAAATGACGCTCATTGTCTGTTAAG----CGTACCCAGTCCGTCATG 9057075 Query 160412 TCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 || | || | ||| ||||| ||| | |||| Sbjct 9057076 TCCTTGGATAGATCCACCTCCTCCACAGTCCA 9057107 >seq17434 Length=8399593 Score = 145 bits (160), Expect = 1e-29 Identities = 457/700 (65%), Gaps = 10/700 (1%) Strand=Plus/Plus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 ||| | || |||||||| ||||| || | || ||| | | | ||||| ||||| || Sbjct 1622242 TTGGCGACGGTGAACTGTATGGCATTTGCAGCCGGCTTCGTGCGAAGATAATACATTCCC 1622301 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 ||||| || || | |||| ||| | || || || | |||||||| |||||| Sbjct 1622302 GTCTTAAGACCGGCTTTCCACGAGTAAAAATGGATCGATGTCAGTTTGCCATAGTTGGGC 1622361 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCC 204019 || |||| || ||||| | ||||| ||||| || ||||| | | | ||||| || ||| Sbjct 1622362 TCAGCCACATGTATGTTGAACGACTGACTTTGATCAATGAATGCCCCGCGATCGGCTGCC 1622421 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 || ||||| | || ||| || || |||||||| ||||| ||| || || | | Sbjct 1622422 ATTTTGATCGTTGTTTTCACGGATATTTCCCACACGGTCTTATACAGATCCCTCACATTT 1622481 Query 204080 TGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTC-GGCCATCAGTCTCATCCTCG 204137 | || | ||| | || || || || || | | | ||| || | | || || Sbjct 1622482 TTTGGTATGGATTCG-ATGTTTTGTATTGATCC-TCGACTGGCGATTATTTGATTCTTCA 1622539 Query 204138 TCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCT 204197 | || || |||||| | ||| | | | || |||| || || | || | | || Sbjct 1622540 TATCATCATCCCACAAGTCCAGCTCCGTTAAATCACGCAACAAATGATGATTCACCACCT 1622599 Query 204198 GAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCT 204257 | || || ||||||||||| | ||||||| | | ||| ||| | || || |||| | Sbjct 1622600 GGAACTCACCGGACAGCACGCGTCGGGTGTAGATGTTTGAGGTATACGGCTCAAACGATT 1622659 Query 204258 CGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGT 204317 | || ||||| | || ||||| || || || |||||||| || | ||||| || | Sbjct 1622660 CATTATTGCCCATTATTTGAGCCGTAGATGCGGTTGGCATGGGCGCAACAAGCAGAGAAT 1622719 Query 204318 TGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---GTGCATCGCAC 204374 |||||||||| | | | || | |||| || ||| ||||||| | | |||| Sbjct 1622720 TGCGCACACCATGCTCCTTGATCGACAGCTTAAGCGAGTTCCAGTCCCAGAG-ATCG--G 1622776 Query 204375 TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGT 204434 | ||| || ||||||||| ||| |||| ||||| || | || ||||| || || | Sbjct 1622777 TTGGTGTCTTGCCCCACATATCGTACTGTAAGATACCCTTGCTAACTGGACTTCCTGGAT 1622836 Query 204435 ACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGT 204494 | || ||| || |||| || |||| | ||| ||| ||| ||| | | | Sbjct 1622837 AGGTTTCATAGGGTCCTTCCTTTTGGGCCAATTCGCAGCTGGCTTCCAGTGCGCCAAAAT 1622896 Query 204495 ACATGGTCTCAAAGATCTGAACGTTTAATCTGGCGGCCTC 204534 | ||||| |||||||| || ||||| |||||||| Sbjct 1622897 AGATGGTTTCAAAGATTTGTTGATTTAAAAGTGCGGCCTC 1622936 Score = 87.8 bits (96), Expect = 3e-12 Identities = 191/286 (67%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 205109 AGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCC 205168 || || ||||| || | || |||||||| ||||| || || | ||| || | | | Sbjct 1623427 AGGCCGGGACACTTATGTGGGCACATCAGGGACCAATCCTCATTGGCTTCGACGCGTTTC 1623486 Query 205169 ATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCT 205228 |||||||| || ||||| | | | |||||||| ||||| |||| | | || | Sbjct 1623487 ATAAACAGATCAGGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGCTCCTCTTTG 1623546 Query 205229 CCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCAC 205288 || ||| || ||||| |||| | | || || | ||||||||||| || | Sbjct 1623547 CCCGTGTTTTTCTTCAAATCCATAAATTCTAATATATCCGAATGCCACGGCTCCAAATAG 1623606 Query 205289 ACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTG 205348 | ||| | ||| || || | ||| |||||||| ||||| ||| | || ||| Sbjct 1623607 ATGGCAAATGCACCCGGTCGCTTACCGCCACCCTGATCCACATAGCGTGCCACATTATTG 1623666 Query 205349 AAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394 || || |||||||| |||||||| || || | || || ||||||| Sbjct 1623667 AATACACGCAGCATTGGCACCAGCCCATTCGAAGTGCCATTCGTGC 1623712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794981856166400