Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq17438 127 2e-24 seq17436 125 8e-24 seq17440 123 3e-23 seq17434 95.1 1e-14 >seq17438 Length=17193109 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | ||||| |||| || |||||| ||||| |||||||||| Sbjct 16961279 TGCCACCGCGCAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 16961338 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || |||||||||||||| || ||||| |||||||| || | | Sbjct 16961339 ACAGGGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGG 16961398 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||||| ||||| ||| | || | | ||||| | |||| Sbjct 16961399 GAATTCCCTCCTTGTCCTGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCA 16961458 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | |||| |||||||| || || || || || || ||||||||||||||| Sbjct 16961459 CCTCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTCACAAAGATTTGCATT 16961508 >seq17436 Length=11997470 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||| || || |||||||| | || || ||||||||||||||||| Sbjct 6692587 CTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAA 6692528 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | || |||||||||| |||||| ||| | | Sbjct 6692527 GATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 6692468 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | ||||| |||| |||||||| ||||| |||| || || || Sbjct 6692467 CTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGAC 6692408 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 6692407 GAAGATCTGCAT 6692396 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||| || || |||||||| | || || ||||||||||||||||| Sbjct 6692815 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAA 6692756 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | || |||||||||| |||||| ||| | | Sbjct 6692755 GATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 6692696 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | ||||| |||| |||||||| ||||| |||| ||||| || Sbjct 6692695 CTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGAC 6692636 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 6692635 GAAGATCTGCAT 6692624 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || |||||||| | || || ||||||||||||||||| Sbjct 6693271 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAA 6693212 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | || |||||||||| |||||| ||| | | Sbjct 6693211 GATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 6693152 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | ||||| |||| |||||||| ||||| |||| ||||| || Sbjct 6693151 CTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGAC 6693092 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 6693091 GAAGATCTGCAT 6693080 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || |||||||| | || || |||||||||||||| || Sbjct 6693043 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAA 6692984 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | || |||||||||| |||||| ||| | | Sbjct 6692983 GATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 6692924 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | ||||| |||| |||||||| ||||| |||| || || || Sbjct 6692923 CTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGAC 6692864 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 6692863 GAAGATCTGCAT 6692852 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || |||||||| | || || ||||||||||||||||| Sbjct 6693499 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAA 6693440 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | || |||||||||| |||||| ||| | | Sbjct 6693439 GATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 6693380 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | ||||| |||| |||||||| ||||| |||| || || || Sbjct 6693379 CTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGAC 6693320 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 6693319 GAAGATCTGCAT 6693308 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || |||||||| | || || ||||||||||||||||| Sbjct 6693727 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAA 6693668 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | || |||||||||| |||||| ||| | | Sbjct 6693667 GATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 6693608 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | ||||| |||| |||||||| ||||| |||| || || || Sbjct 6693607 CTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGAC 6693548 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 6693547 GAAGATCTGCAT 6693536 Score = 113 bits (124), Expect = 5e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || |||||||| | || || |||||||||||||| || Sbjct 6692131 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAA 6692072 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | || |||||||||| |||||| ||| | | Sbjct 6692071 GATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 6692012 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | ||||| |||| |||||||| ||||| |||| || || || Sbjct 6692011 CTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGAC 6691952 Query 46582 AAAGATTTGCATTTT 46596 || || ||||| || Sbjct 6691951 GAAAATCTGCATATT 6691937 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||| || || |||||||| | || || |||||||||||||| || Sbjct 6692359 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAA 6692300 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | || |||||||||| |||||| ||| | | Sbjct 6692299 GATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 6692240 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | ||||| |||| |||||||| ||||| |||| || || || Sbjct 6692239 CTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGAC 6692180 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 6692179 GAAGATCTGCAT 6692168 >seq17440 Length=24565398 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | ||| | |||| ||| | || |||||| ||||||||||||||||| Sbjct 434853 CCTCCCCTGAGACGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 434912 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | |||||| | || || |||||||| || || || ||||| ||||||||||| | || Sbjct 434913 AAAGTGCGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAAACGCTGCTGGTCTGGGGGG 434972 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||| | || | | |||||| | ||| || Sbjct 434973 ATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACC 435032 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| || ||||| || || || || || || |||||||| |||||| Sbjct 435033 TCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCATT 435080 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||||||||| | ||||| | || || | ||| || |||||||| Sbjct 434660 CTCCTTCTGGATATTGTAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAA 434719 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||||||| || || ||||| | Sbjct 434720 GATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATT 434779 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||||| | |||||| |||| |||||||| || || |||| |||||||| Sbjct 434780 TTCAATAGTGTCGCTAGGTTCCACTTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAAC 434839 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 434840 GAAGATCTGCATT 434852 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || ||||| |||||||| | ||||| | || || | ||| || |||||||| Sbjct 435116 CTCTTTCTGAATATTATAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAA 435175 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| |||||| ||| | | Sbjct 435176 GATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTT 435235 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| | ||| || |||| |||||||| || || |||| |||||||| Sbjct 435236 CTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTGATGGTCTTCCCAGTCAATGTTTTAAC 435295 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 435296 GAAGATCTGCATT 435308 >seq17434 Length=8399593 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||||||| ||| || || || ||||| || || |||||||| | || || Sbjct 1558150 CACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTC 1558091 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | |||||||| || || || || |||||||| || | || | | || |||||| Sbjct 1558090 CAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 1558031 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| |||| | | | || || || ||| || || | |||||||| || Sbjct 1558030 GATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 1557971 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || |||||||| ||||||||||| Sbjct 1557970 ACCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565115178028800