Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq17440 104 2e-17 seq17438 82.4 5e-11 >seq17440 Length=24565398 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||| || ||||| || | ||| ||||| || |||||||| |||| | Sbjct 435081 CCTCCTCGGAGACGGAGAACCAAGTGGAGAGTCGACTCTTTCTGAATATTATAGTCGGAC 435140 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| ||||| ||||| ||| | || || | ||||||||| || | ||| Sbjct 435141 AAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 435200 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| || || |||| || | | |||||| | ||| || Sbjct 435201 ATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACC 435260 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||| || || || || || || ||||| |||||||||||||| Sbjct 435261 TCCAGAGTGATGGTCTTCCCAGTCAATGTTTTAACGAAGATCTGCAT 435307 Score = 102 bits (112), Expect = 6e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| |||||| ||||| || | ||| || || || ||||| || |||| Sbjct 434624 GCCACCCCGCAGACGCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGA 434683 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| ||||| ||||| ||| | || || | |||||||||||| | || Sbjct 434684 CAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGG 434743 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTC 39668 | || || ||||| | | |||| | || | || || || ||| || | ||| Sbjct 434744 AATTCCCTCCTTGTC-CTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTAGG--TTC 434800 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| |||||||| || || || || || || ||||| |||||||||||||| Sbjct 434801 CACTTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 434851 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||| || |||||||| | ||| || || || ||||| || |||| |||| ||| | Sbjct 434864 ACGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAAAGTGCGACC 434923 Query 39564 ATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 ||| || | || |||||||| ||| || ||||||||||| || | ||| | || || | Sbjct 434924 ATCCTCAAGCTGCTTTCCCGC-AAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCT 434982 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 |||| || || |||| || | | |||||| | ||| || |||| ||||| Sbjct 434983 TGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTAA 435042 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || | || || || ||||||||||| Sbjct 435043 TGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 435079 >seq17438 Length=17193109 Score = 82.4 bits (90), Expect = 5e-11 Identities = 165/242 (68%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 39484 CAATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543 |||| || ||| || |||| ||| || ||||| |||| || || || || || || Sbjct 16961273 CAATGAT-GCCACCGCGCAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTG 16961331 Query 39544 TAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 || |||| || |||| |||| |||| || || ||| |||| || |||||||||||| Sbjct 16961332 TAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGA 16961391 Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCG 39663 || | ||| | || || ||||| || || |||| || | | ||||| | | Sbjct 16961392 TCTGGGGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAG 16961451 Query 39664 CTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCA-TGTC 39722 ||||| ||||| || || || || || || | || || || ||||| |||| |||| Sbjct 16961452 GGCTCCACCTCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTCACAAAGATTTGCATTGTC 16961511 Query 39723 GT 39724 || Sbjct 16961512 GT 16961513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347295766591520