Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq17440 104 2e-17
seq17438 82.4 5e-11
>seq17440
Length=24565398
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| ||||| | ||| || ||||| || | ||| ||||| || |||||||| |||| |
Sbjct 435081 CCTCCTCGGAGACGGAGAACCAAGTGGAGAGTCGACTCTTTCTGAATATTATAGTCGGAC 435140
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| ||| |||| ||||| ||||| ||| | || || | ||||||||| || | |||
Sbjct 435141 AAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 435200
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| || || ||||| || || |||| || | | |||||| | ||| ||
Sbjct 435201 ATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACC 435260
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|||| ||| || || || || || || ||||| ||||||||||||||
Sbjct 435261 TCCAGAGTGATGGTCTTCCCAGTCAATGTTTTAACGAAGATCTGCAT 435307
Score = 102 bits (112), Expect = 6e-17
Identities = 164/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || |||| |||||| ||||| || | ||| || || || ||||| || ||||
Sbjct 434624 GCCACCCCGCAGACGCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGA 434683
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
||| ||| |||| ||||| ||||| ||| | || || | |||||||||||| | ||
Sbjct 434684 CAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGG 434743
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTC 39668
| || || ||||| | | |||| | || | || || || ||| || | |||
Sbjct 434744 AATTCCCTCCTTGTC-CTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTAGG--TTC 434800
Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||| |||||||| || || || || || || ||||| ||||||||||||||
Sbjct 434801 CACTTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 434851
Score = 82.4 bits (90), Expect = 5e-11
Identities = 150/217 (69%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563
||| || |||||||| | ||| || || || ||||| || |||| |||| ||| |
Sbjct 434864 ACGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAAAGTGCGACC 434923
Query 39564 ATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622
||| || | || |||||||| ||| || ||||||||||| || | ||| | || || |
Sbjct 434924 ATCCTCAAGCTGCTTTCCCGC-AAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCT 434982
Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682
|||| || || |||| || | | |||||| | ||| || |||| |||||
Sbjct 434983 TGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAACCTCCAGAGTAA 435042
Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || || || || | || || || |||||||||||
Sbjct 435043 TGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 435079
>seq17438
Length=17193109
Score = 82.4 bits (90), Expect = 5e-11
Identities = 165/242 (68%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 39484 CAATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543
|||| || ||| || |||| ||| || ||||| |||| || || || || || ||
Sbjct 16961273 CAATGAT-GCCACCGCGCAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTG 16961331
Query 39544 TAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603
|| |||| || |||| |||| |||| || || ||| |||| || ||||||||||||
Sbjct 16961332 TAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGA 16961391
Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCG 39663
|| | ||| | || || ||||| || || |||| || | | ||||| | |
Sbjct 16961392 TCTGGGGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAG 16961451
Query 39664 CTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCA-TGTC 39722
||||| ||||| || || || || || || | || || || ||||| |||| ||||
Sbjct 16961452 GGCTCCACCTCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTCACAAAGATTTGCATTGTC 16961511
Query 39723 GT 39724
||
Sbjct 16961512 GT 16961513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347295766591520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |