Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq17436 129 2e-24 seq17440 127 8e-24 seq17434 125 3e-23 >seq17436 Length=11997470 Score = 129 bits (142), Expect = 2e-24 Identities = 250/366 (68%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||||| || || || || || | ||||||||| ||||||||| ||||| || ||| Sbjct 8195584 TTTGCGCCCGAGGAGATCTCCGCCATGGTTCTTGGTAAAATGAAGGAAACGGCCGAAGCG 8195525 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| |||| || ||| |||| || | || |||||||| |||||||| ||||| Sbjct 8195524 TATCTTGGCAAGAAGGTCACTCATGCTGTTGTCACCGTTCCCGCCTATTTCAACGATGCC 8195465 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || || || || || || ||||| || ||||||||| | | || | || || || Sbjct 8195464 CAGCGTCAGGCCACCAAGGATGCTGGCGTCATTGCTGGTCTCCAGGTGATGCGCATCATA 8195405 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 |||||||| || || ||||| | || ||||| || ||| || ||| || | || Sbjct 8195404 AATGAACCGACTGCCGCTGCCATTGCTTATGGTCT-GGACAAG---AAGGAA--GGCGAG 8195351 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 || ||| | | || || ||||| || || || || ||| || | || | || Sbjct 8195350 AAGAATGTGCTCGTTTTCGATTTGGGCGGCGGCACCTTCGATGTGTCCCTGCTGACCATC 8195291 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 || |||| || ||||| || || |||||||||||||||||| | || || |||||| Sbjct 8195290 GATAATGGTGTGTTTGAGGTCGTTGCCACCAATGGTGATACTCATTTGGGTGGCGAAGAT 8195231 Query 451598 ATTGAT 451603 | ||| Sbjct 8195230 TTCGAT 8195225 >seq17440 Length=24565398 Score = 127 bits (140), Expect = 8e-24 Identities = 250/365 (68%), Gaps = 5/365 (1%) Strand=Plus/Minus Query 451243 TCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATAT 451302 |||||| || | || || ||||| || || || ||||| || || || || |||| | Sbjct 18401238 TCCTGAGGAGGTATCCTCGATGGTGCTCACCAAGATGAAGGAGACGGCGGAGGCATATCT 18401179 Query 451303 TGGTT-CTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 ||| | ||| |||| |||||||| | || ||||| || |||||||||||| | || | Sbjct 18401178 GGGTGGCACCA-TTACGGATGCAGTGGTCACCGTTCCGGCCTATTTCAATGATTCGCAGC 18401120 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 | || || || || ||||| || || || || || ||||| || || || || |||| Sbjct 18401119 GACAGGCGACCAAGGATGCGGGCACCATAGCCGGATTGAATGTGCTCCGCATCATCAATG 18401060 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaa 451481 | || || ||||| || | || ||||| || ||| || | | | || | || | || Sbjct 18401059 AGCCGACGGCAGCGGCAATTGCCTATGG-CTTGGATAA--ACAGGCGACCGGGGAGAGAA 18401003 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 || | | | |||||| | || || || || ||| || || || | || || | Sbjct 18401002 ATGTGCTGATCTTTGATCTGGGCGGCGGCACCTTCGATGTCTCCGTGCTGACCATCGAGG 18400943 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 |||| | ||||| || ||||| || || ||||| ||||| || || |||||||||| Sbjct 18400942 ATGGCATCTTTGAGGTGAAGGCCACTGCGGGGGATACGCATCTGGGCGGCGAAGATATTG 18400883 Query 451602 ATAAT 451606 | ||| Sbjct 18400882 ACAAT 18400878 Score = 122 bits (134), Expect = 3e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || |||||||||||| ||||||| || || || ||||| || |||||| | || Sbjct 435536 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435477 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||||| |||| || |||||||| ||||| ||||| || || || || Sbjct 435476 CGATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCA 435417 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||| | || ||| | || ||||| | |||||||| | || ||| | || ||||| Sbjct 435416 ACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAA 435357 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || ||||| || Sbjct 435356 CATTCAGAAGGAGTCGACTCTCCACTTGGT 435327 Score = 122 bits (134), Expect = 3e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || |||||||||||| ||||||| || || || ||||| || |||||| | || Sbjct 435992 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTCTGGAGGTTGAACCTTC 435933 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||||| |||| || |||||||| ||||| ||||| || || || || Sbjct 435932 CGATACTATTGAGAACGTTAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCAGACCA 435873 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||| | || ||| | || ||||| | |||||||| | || ||| | || ||||| Sbjct 435872 ACAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAA 435813 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || ||||| || Sbjct 435812 CATTCAGAAGGAGTCGACTCTCCACTTGGT 435783 Score = 109 bits (120), Expect = 2e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || |||||||||||| ||||||| || || || ||| | || || ||| | Sbjct 434852 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAACCTAG 434793 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| | | || |||||||| || ||||| ||||||||||| ||||| Sbjct 434792 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 434733 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || ||| | || ||||| | |||||||| | || ||| | || || || Sbjct 434732 GCAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAA 434673 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || ||||| || Sbjct 434672 TATCCAGAAGGAGTCGACTCTCCACTTGGT 434643 Score = 109 bits (120), Expect = 2e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || |||||||||||| ||||||| || || || ||||| || |||||| | || Sbjct 435308 AATGCAGATCTTCGTTAAAACATTGACTGGGAAGACCATCACTCTGGAGGTTGAACCTTC 435249 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| |||| || || ||||| ||||| ||||| || || || || Sbjct 435248 CGACACAATTGAGAACGTTAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 435189 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || ||| | || ||||| | |||||||| | || ||| | || ||||| Sbjct 435188 GCAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAA 435129 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 |||| | || || | || || ||||| || Sbjct 435128 TATTCAGAAAGAGTCGACTCTCCACTTGGT 435099 Score = 98.7 bits (108), Expect = 4e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || ||| ||||||| || || || ||| | || || || | Sbjct 435764 AATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAG 435705 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| | | || |||||||| || ||||| ||||||||||| ||||| Sbjct 435704 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 435645 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| || || || || | || || || ||||| ||||| | || ||| | || ||||| Sbjct 435644 ACAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAA 435585 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 ||| | ||||| | || || ||||| || | | || |||||| ||| || Sbjct 435584 CATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGAGGAGGAATGCA 435531 Score = 96.9 bits (106), Expect = 1e-14 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || ||| ||||||| || || || ||| | || || || | Sbjct 436219 ATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATCACTTTAGAAGTGGAGCCCAGC 436160 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || |||||||| || ||||| ||||||||||| |||||| Sbjct 436159 GACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAA 436100 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || || || | || || || ||||| ||||| | || ||| | || ||||| Sbjct 436099 CAGCGATTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCCGACTATAAC 436040 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 ||| | ||||| | || || ||||| || | | || |||||| ||| || Sbjct 436039 ATTCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCAGAGGAGGAATGCA 435987 >seq17434 Length=8399593 Score = 125 bits (138), Expect = 3e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||||||||| || || ||||| || || |||||||| || ||| | || Sbjct 1557941 ATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 1558000 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | | ||| || || || || || |||||||||||||| ||||| Sbjct 1558001 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 1558060 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || |||||||| || | || || ||| | |||||||| | ||| | | ||||| || Sbjct 1558061 CAGCGTTTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCTGATTACAAC 1558120 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || ||||| | ||||| || Sbjct 1558121 ATTCAGAAAGAGTCAACATTGCACTTGGT 1558149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975276925723520