Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq17437 239 3e-57
seq17436 136 3e-26
>seq17437
Length=14172833
Score = 239 bits (264), Expect = 3e-57
Identities = 736/1130 (65%), Gaps = 9/1130 (1%)
Strand=Plus/Minus
Query 517587 CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTT 517646
||||| | || || || | |||||||| || |||||||| ||||| ||||| | || |
Sbjct 826328 CAAGA-TGGCAGCCTGGACGGCAGCACCGTAAGCAACAGCCTCATCGGGATTGATAGACT 826270
Query 517647 CATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAG 517706
|| || | || |||||||| | || || || | ||||| |||||||| |
Sbjct 826269 TGTTCAGCTCCTTGCCATTGAACAGATCCTGCAGCAGGCGCTGCACCTTGGGAATACGCG 826210
Query 517707 ATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATA 517766
|| || || || || ||||| || || | || || ||||| || | ||| |
Sbjct 826209 TGGAGCCACCGACCAACACAATATCGTGAATGGCCGACTTGTCCAGCTTGGCATCGCGCA 826150
Query 517767 AAACTTTTTCAACGGGTTCAAGACCCGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAAT 517825
| | || || ||||| || | ||| | |||| || | || || |||||
Sbjct 826149 GAGCCTTCTCCACGGGGTCCATGGT-GCTGCGGAACAGATCAGCGTTCAGCTCCTCGAAA 826091
Query 517826 TTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATC 517885
|| | ||| | | | || |||| | || ||||||| || |||| |||||
Sbjct 826090 CGGGCACGAGTGATTGAGGTATAGAAATCGGTGCCCTCGAACAGCGAGTCAATCTCAATG 826031
Query 517886 GTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTT 517945
| | || || || ||||| |||| || || ||||| || || || || | || |
Sbjct 826030 CTCGCCTGGGTGGAGGAAGAAAGTGTGCGCTTTGCACGCTCGCAAGCGGTGCGCAGACGG 825971
Query 517946 CGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAA 518003
|| | || ||| ||| ||| ||| | || | || | |||||| || | |
Sbjct 825970 CGCAGAGCAC--GCTTGTTGGAGGTCAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCA 825913
Query 518004 CACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACG 518063
|| | || || |||||||| ||||| || ||||| ||||| | || | || | ||
Sbjct 825912 CAAAGTGAGTGACTAGACGATTGTCAAAGTCCTCACCACCCAAATGGGTGTCACCGGCCG 825853
Query 518064 TAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCAC 518123
||| | | || | ||| | || || |||| |||| || | |||||| || ||||
Sbjct 825852 TAGATTTGACCTCGAAGATGCCGTCATCAATCGACAGAATGGAAACATCAAAAGTACCAC 825793
Query 518124 CACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACG 518183
| |||| ||| ||||| | ||||| ||| | || || || || ||||| |
Sbjct 825792 CGCCCAAATCGAAAATCAACACATTACGCTCTCCCACCGCCTTCTTGTCGAGGCCATAGG 825733
Query 518184 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 518243
||| ||||| |||||||| || || ||||| | ||| ||||| || || ||||| | |
Sbjct 825732 CAATGGCAGCGGCAGTTGGCTCGTTGATAATACGCAATACATTCAGGCCGGCAATGGTGC 825673
Query 518244 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 518303
| ||||| || || ||||| | ||||| ||||| || || || || ||||| || ||||
Sbjct 825672 CAGCATCCTTGGTCGCTTGACGCTGTGAGTCGTTGAAGTAGGCTGGCACAGTGATCACGG 825613
Query 518304 CATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCA 518363
||| || || || || | ||| || || || | |||||||| | || | ||
Sbjct 825612 CATTGGTCACCGTCTTGCCCAGATACGCCTCGGCGGTCTCCTTCATTTTGGTCAACACCA 825553
Query 518364 TTGATGAAATTTGTTCTGGGGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAA 518422
| || || || | || |||||| | | ||| || | | || | || ||||
Sbjct 825552 TGGAGGAGATCTCCTC-GGGGAAGAAGGTCTTCTTCTCGTCCTTGTACGTAACCTCAATC 825494
Query 518423 TATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACA 518482
| || || | |||| | | ||||| || ||||||| |||||||| || || ||
Sbjct 825493 TTGGGCTTGCCATCAACGCTGACAACTTCGAAGGGCCAGTGCTTCATATCGGACTGCACG 825434
Query 518483 CTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGA 518542
|| | || | | |||||| | || || ||||| || || || | |||||
Sbjct 825433 GCCGAATCCTCGAACTTGCGACCAATCAGACGCTTAGCATCGAAGATCGTTTGAGTTGGG 825374
Query 518543 TTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAA 518602
|| || || | |||| |||||| ||||| || |||| | | || || || || || | |
Sbjct 825373 TTCATGGCCACCTGATTTTTGGCGGCATCACCGATCAAACGCTCCGTATCCGTGAAGGCA 825314
Query 518603 ACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTT 518662
||||| ||||| || || |||||||| || || || ||||| |||||||| || ||||
Sbjct 825313 ACATACGATGGTGTCGTACGATTACCCTGGTCGTTGGCAATGATTTCAACCTTGCCATGC 825254
Query 518663 TGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712
|| | ||||| || || | ||||| || ||||||||||| | |||
Sbjct 825253 TGGAACACACCCACGCAGGAGTAGGTTGTGCCCAAATCAATACCGACAGC 825204
>seq17436
Length=11997470
Score = 136 bits (150), Expect = 3e-26
Identities = 424/644 (66%), Gaps = 22/644 (3%)
Strand=Plus/Plus
Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079
||| | ||| |||||||| || ||||| | ||||| || || || || | ||
Sbjct 8195219 ACGCTGATCGAAATCTTCGCCACCCAAATGAGTATCACCATTGGTGGCAACGACCTCAAA 8195278
Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139
| |||| || | | || || | ||||| ||| || || |||| ||| ||||
Sbjct 8195279 CACACCATTATCGATGGTCAGCAGGGACACATCGAAGGTGCCGCCGCCCAAATCGAAAAC 8195338
Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199
|| |||||| | || | ||| || || || |||||||| |||| ||||| |||||
Sbjct 8195339 GAGCACATTCTTCTC---GCCTTCCTTCTTGTCCAGACCATAAGCAATGGCAGCGGCAGT 8195395
Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259
|||||||| || || | || || | ||||||||||| || ||||| || |||||
Sbjct 8195396 CGGTTCATTTATGATGCGCATCACCTGGAGACCAGCAATGACGCCAGCATCCTTGGTGGC 8195455
Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTT 518319
|| | || | |||||| ||||| || ||||| || | ||| |||| ||| || | ||
Sbjct 8195456 CTGACGCTGGGCATCGTTGAAATAGGCGGGAACGGTGACAACAGCATGAGTGACCTTCTT 8195515
Query 518320 ACCAATATAAGCGCTT--GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 518377
|||| ||| ||||| ||||||| |||||||||| | || ||| | || || |
Sbjct 8195516 GCCAAGATA--CGCTTCGGCCGTTTCCTTCATTTTACCAAGAACCATGGCGGAGATCTCC 8195573
Query 518378 TCTGGGGAATATTGCTTGGATTCATTTTGATATG-AT--ACTTCAAAATATGGTTT--AT 518432
|| || | | | |||| || || | | || || | | || ||| || |
Sbjct 8195574 TCGGGCGCAAAGACCTTG---CCACCCTGCGAGGTATCGACATTGATATGTGGCTTCGAG 8195630
Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492
| | | | ||| || || || || |||| ||||| || ||| | |||
Sbjct 8195631 TTC--TTCTCGACAACCTTGAAGGGGAAGAATTTGATATCGTGCTGCACATTCGTGTCGG 8195688
Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CA 518551
| || | ||||| ||||| || ||||| || | ||||| ||| || | | ||
Sbjct 8195689 ACCATTCACGTCCAATCAATCGCTTCGCATCGAAGACCGTATTCTCTGGGTTTGTGGTCA 8195748
Query 518552 GCTTGATATTTGGCTGCATCTCCAATCAGATGTT--CTGTC-TCTGTAAATGAAACATAT 518608
|| |||| |||||| ||||||||||||||| | | | || |||| || | ||||||
Sbjct 8195749 GC-TGATTTTTGGCAGCATCTCCAATCAGACGCTCGCCATCGGCTGTGAAGGCCACATAT 8195807
Query 518609 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAAC 518652
|| || || | ||||| || ||||| || || || || |||||
Sbjct 8195808 GAGGGCGTAATACGATTGCCCTGATCGTTGGCGATGATCTCAAC 8195851
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3779956969752640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |