Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq17437 239 3e-57 seq17436 136 3e-26 >seq17437 Length=14172833 Score = 239 bits (264), Expect = 3e-57 Identities = 736/1130 (65%), Gaps = 9/1130 (1%) Strand=Plus/Minus Query 517587 CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTT 517646 ||||| | || || || | |||||||| || |||||||| ||||| ||||| | || | Sbjct 826328 CAAGA-TGGCAGCCTGGACGGCAGCACCGTAAGCAACAGCCTCATCGGGATTGATAGACT 826270 Query 517647 CATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAG 517706 || || | || |||||||| | || || || | ||||| |||||||| | Sbjct 826269 TGTTCAGCTCCTTGCCATTGAACAGATCCTGCAGCAGGCGCTGCACCTTGGGAATACGCG 826210 Query 517707 ATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATA 517766 || || || || || ||||| || || | || || ||||| || | ||| | Sbjct 826209 TGGAGCCACCGACCAACACAATATCGTGAATGGCCGACTTGTCCAGCTTGGCATCGCGCA 826150 Query 517767 AAACTTTTTCAACGGGTTCAAGACCCGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAAT 517825 | | || || ||||| || | ||| | |||| || | || || ||||| Sbjct 826149 GAGCCTTCTCCACGGGGTCCATGGT-GCTGCGGAACAGATCAGCGTTCAGCTCCTCGAAA 826091 Query 517826 TTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATC 517885 || | ||| | | | || |||| | || ||||||| || |||| ||||| Sbjct 826090 CGGGCACGAGTGATTGAGGTATAGAAATCGGTGCCCTCGAACAGCGAGTCAATCTCAATG 826031 Query 517886 GTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTT 517945 | | || || || ||||| |||| || || ||||| || || || || | || | Sbjct 826030 CTCGCCTGGGTGGAGGAAGAAAGTGTGCGCTTTGCACGCTCGCAAGCGGTGCGCAGACGG 825971 Query 517946 CGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAA 518003 || | || ||| ||| ||| ||| | || | || | |||||| || | | Sbjct 825970 CGCAGAGCAC--GCTTGTTGGAGGTCAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCA 825913 Query 518004 CACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACG 518063 || | || || |||||||| ||||| || ||||| ||||| | || | || | || Sbjct 825912 CAAAGTGAGTGACTAGACGATTGTCAAAGTCCTCACCACCCAAATGGGTGTCACCGGCCG 825853 Query 518064 TAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCAC 518123 ||| | | || | ||| | || || |||| |||| || | |||||| || |||| Sbjct 825852 TAGATTTGACCTCGAAGATGCCGTCATCAATCGACAGAATGGAAACATCAAAAGTACCAC 825793 Query 518124 CACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACG 518183 | |||| ||| ||||| | ||||| ||| | || || || || ||||| | Sbjct 825792 CGCCCAAATCGAAAATCAACACATTACGCTCTCCCACCGCCTTCTTGTCGAGGCCATAGG 825733 Query 518184 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 518243 ||| ||||| |||||||| || || ||||| | ||| ||||| || || ||||| | | Sbjct 825732 CAATGGCAGCGGCAGTTGGCTCGTTGATAATACGCAATACATTCAGGCCGGCAATGGTGC 825673 Query 518244 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 518303 | ||||| || || ||||| | ||||| ||||| || || || || ||||| || |||| Sbjct 825672 CAGCATCCTTGGTCGCTTGACGCTGTGAGTCGTTGAAGTAGGCTGGCACAGTGATCACGG 825613 Query 518304 CATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCA 518363 ||| || || || || | ||| || || || | |||||||| | || | || Sbjct 825612 CATTGGTCACCGTCTTGCCCAGATACGCCTCGGCGGTCTCCTTCATTTTGGTCAACACCA 825553 Query 518364 TTGATGAAATTTGTTCTGGGGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAA 518422 | || || || | || |||||| | | ||| || | | || | || |||| Sbjct 825552 TGGAGGAGATCTCCTC-GGGGAAGAAGGTCTTCTTCTCGTCCTTGTACGTAACCTCAATC 825494 Query 518423 TATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACA 518482 | || || | |||| | | ||||| || ||||||| |||||||| || || || Sbjct 825493 TTGGGCTTGCCATCAACGCTGACAACTTCGAAGGGCCAGTGCTTCATATCGGACTGCACG 825434 Query 518483 CTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGA 518542 || | || | | |||||| | || || ||||| || || || | ||||| Sbjct 825433 GCCGAATCCTCGAACTTGCGACCAATCAGACGCTTAGCATCGAAGATCGTTTGAGTTGGG 825374 Query 518543 TTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAA 518602 || || || | |||| |||||| ||||| || |||| | | || || || || || | | Sbjct 825373 TTCATGGCCACCTGATTTTTGGCGGCATCACCGATCAAACGCTCCGTATCCGTGAAGGCA 825314 Query 518603 ACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTT 518662 ||||| ||||| || || |||||||| || || || ||||| |||||||| || |||| Sbjct 825313 ACATACGATGGTGTCGTACGATTACCCTGGTCGTTGGCAATGATTTCAACCTTGCCATGC 825254 Query 518663 TGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 || | ||||| || || | ||||| || ||||||||||| | ||| Sbjct 825253 TGGAACACACCCACGCAGGAGTAGGTTGTGCCCAAATCAATACCGACAGC 825204 >seq17436 Length=11997470 Score = 136 bits (150), Expect = 3e-26 Identities = 424/644 (66%), Gaps = 22/644 (3%) Strand=Plus/Plus Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 ||| | ||| |||||||| || ||||| | ||||| || || || || | || Sbjct 8195219 ACGCTGATCGAAATCTTCGCCACCCAAATGAGTATCACCATTGGTGGCAACGACCTCAAA 8195278 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 | |||| || | | || || | ||||| ||| || || |||| ||| |||| Sbjct 8195279 CACACCATTATCGATGGTCAGCAGGGACACATCGAAGGTGCCGCCGCCCAAATCGAAAAC 8195338 Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 || |||||| | || | ||| || || || |||||||| |||| ||||| ||||| Sbjct 8195339 GAGCACATTCTTCTC---GCCTTCCTTCTTGTCCAGACCATAAGCAATGGCAGCGGCAGT 8195395 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 |||||||| || || | || || | ||||||||||| || ||||| || ||||| Sbjct 8195396 CGGTTCATTTATGATGCGCATCACCTGGAGACCAGCAATGACGCCAGCATCCTTGGTGGC 8195455 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTT 518319 || | || | |||||| ||||| || ||||| || | ||| |||| ||| || | || Sbjct 8195456 CTGACGCTGGGCATCGTTGAAATAGGCGGGAACGGTGACAACAGCATGAGTGACCTTCTT 8195515 Query 518320 ACCAATATAAGCGCTT--GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 518377 |||| ||| ||||| ||||||| |||||||||| | || ||| | || || | Sbjct 8195516 GCCAAGATA--CGCTTCGGCCGTTTCCTTCATTTTACCAAGAACCATGGCGGAGATCTCC 8195573 Query 518378 TCTGGGGAATATTGCTTGGATTCATTTTGATATG-AT--ACTTCAAAATATGGTTT--AT 518432 || || | | | |||| || || | | || || | | || ||| || | Sbjct 8195574 TCGGGCGCAAAGACCTTG---CCACCCTGCGAGGTATCGACATTGATATGTGGCTTCGAG 8195630 Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492 | | | | ||| || || || || |||| ||||| || ||| | ||| Sbjct 8195631 TTC--TTCTCGACAACCTTGAAGGGGAAGAATTTGATATCGTGCTGCACATTCGTGTCGG 8195688 Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CA 518551 | || | ||||| ||||| || ||||| || | ||||| ||| || | | || Sbjct 8195689 ACCATTCACGTCCAATCAATCGCTTCGCATCGAAGACCGTATTCTCTGGGTTTGTGGTCA 8195748 Query 518552 GCTTGATATTTGGCTGCATCTCCAATCAGATGTT--CTGTC-TCTGTAAATGAAACATAT 518608 || |||| |||||| ||||||||||||||| | | | || |||| || | |||||| Sbjct 8195749 GC-TGATTTTTGGCAGCATCTCCAATCAGACGCTCGCCATCGGCTGTGAAGGCCACATAT 8195807 Query 518609 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAAC 518652 || || || | ||||| || ||||| || || || || ||||| Sbjct 8195808 GAGGGCGTAATACGATTGCCCTGATCGTTGGCGATGATCTCAAC 8195851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779956969752640