Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq17438 98.7 1e-15 >seq17438 Length=17193109 Score = 98.7 bits (108), Expect = 1e-15 Identities = 171/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 176020 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 176079 ||| || || ||| | | ||| ||||| |||||||| | ||||| || | ||||||||| Sbjct 4176945 ATCTTTGCCGCCCGTCAAACGTGTACCGAACTGACCGCGTGGCTCCAGCAAATTGATATT 4177004 Query 176080 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GTCCGCGAGAGAGACTTCAC 176138 |||||| |||| |||| | ||||| || |||||||| || || || || || || | Sbjct 4177005 GTTTGAGCCCACATAGTTCTGCGCCAGATTCACAATCGTCATCTGC-AGCGACACCTCGC 4177063 Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 176198 |||| || || ||| | | || || || | ||| | ||| ||||| |||| ||| Sbjct 4177064 CGTGATGATAGGCAGACATTTCGGCCACCGAACCCGATAGCTGAGCCACCTTCACCTCGC 4177123 Query 176199 CCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 176258 ||| || | ||| || | | |||| || ||||| || ||| ||||| |||| Sbjct 4177124 GCTTATCGTTACGCTTGAAGCACGTGAACATCACTTTGCGCTGGCCAGGTTTGAGGCCAT 4177183 Query 176259 CCGCCA 176264 || ||| Sbjct 4177184 CCACCA 4177189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620607078156800