Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_014969.1 Length=44055 Score E Sequences producing significant alignments: (Bits) Value seq17438 82.4 2e-11 >seq17438 Length=17193109 Score = 82.4 bits (90), Expect = 2e-11 Identities = 186/278 (67%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 956 CAGCGCCGCTGATGTGGTGGTCCCGCCACGCAGCAGGGCGTTGATTCCCACGGATCTGTC 1015 ||||||| ||| |||| || ||| ||||| ||| ||| | | || |||||| Sbjct 7488817 CAGCGCCTACGATTTGGTTGTGCCGGCACGCGGCAAGGCCATTGTCAAGACTGATCTGCA 7488758 Query 1016 TTTCCAGTTTCCCCGCGGTGTTTACGGCCGCATCGCCCCTCGTTCGGGTCTGGCCGTCAA 1075 | ||| | ||| || || ||||| | || || |||||||| |||||||| || Sbjct 7488757 GGTGCAGGTGCCCGAGGGCTCCTATGGCCGAGTGGCGCCACGTTCGGGCCTGGCCGTGAA 7488698 Query 1076 GTTTTTTATAGACGTGGGTGCCGGGGTGGTGGATAGCGATTACCGCGGTATCGTGTCGGT 1135 | || || || || || |||||||| || || ||||||||||| | | || ||| Sbjct 7488697 GAACTTCATCGATGTAGGCGCCGGGGTTGTAGACGAGGATTACCGCGGCAACCTG--GGT 7488640 Query 1136 GCTG--CTGTTTAACTTTTCGGAGCACAATTTTAACGTGCGCCGAGGTGACCGCATCGCC 1193 | || ||||| ||| |||||| | | ||| | || || || || ||||| || Sbjct 7488639 GTTGTCCTGTTCAACCATTCGGACGCCGACTTTGAGGTAAAGCGTGGCGATCGCATAGCA 7488580 Query 1194 CAGATGATTTTGGAGCGTCACCTCACCCCGGATCTGGA 1231 ||| | |||| ||||| | || ||||||||||| Sbjct 7488579 CAGTTCATTTGCGAGCGCATCTTCTATCCGGATCTGGA 7488542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140825229053760