Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq17434 208 9e-49
>seq17434
Length=8399593
Score = 208 bits (230), Expect = 9e-49
Identities = 957/1531 (63%), Gaps = 7/1531 (0%)
Strand=Plus/Plus
Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371
|||| |||| || | || || || || || || || | ||| | || || || ||
Sbjct 1622583 ATGATGATTCACCACCTGGAACTCACCGGACAGCACGCGTCGGGTGTAGATGTTTGAGGT 1622642
Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431
||| || || | ||||||||||| || | |||||||| || ||||| || |||||||
Sbjct 1622643 ATACGGCTCAAACGATTCATTATTGCCCATTATTTGAGCCGTAGATGCGGTTGGCATGGG 1622702
Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCA 47491
||||| | | ||| | || |||| | | ||| |||||
Sbjct 1622703 CGCAACAAGCAGAGAATTGCGCACACCATGCTCCTTGATCGACAGCTTAAGCGAGTTCCA 1622762
Query 47492 ATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTAT 47551
||||| ||||| | ||| ||| | ||| || || | || || || || |
Sbjct 1622763 GTCCCAGAGATCGGTTGGTGTCTTGCCCCACATATCGTACTGTAAGATACCCTTGCTAAC 1622822
Query 47552 CGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTC 47611
||| || ||| |||| ||| || || | || || | ||| || || |||||
Sbjct 1622823 TGGACTTCCTGGATAGGTTTCATAGGGTCCTTCCTTTTGGGCCAATTCGCAGCTGGCTTC 1622882
Query 47612 CAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGA 47671
|| ||| | | |||| || |||||||| |||| | |||| | || |||
Sbjct 1622883 CAGTGCGCCAAAATAGATGGTTTCAAAGATTTGTTGATTTAAAAGTGCGGCCTCTTCGCT 1622942
Query 47672 TTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAAT 47731
||| |||||| |||| ||| || |||||||| ||||||||||||||
Sbjct 1622943 CTCATAAGGATGACGCATTAGAATCAATGCATCCGCGAATCCTTGCACACCAATACCAAT 1623002
Query 47732 TGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTAT 47791
|||| ||| ||| || || || || || | ||||| | ||| || || ||
Sbjct 1623003 GGGTCGATGGCGAAAATTGGATTTCTTTGCCTCCGGAAGCGGATAGTAGTTGATGTCAAT 1623062
Query 47792 AATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAA 47851
|||||||| | | | |||| | | ||| || || || |
Sbjct 1623063 TATTTTATTCAAATTCTTGGTTACTGTTTTGGTGACTTCTTTCAGTTTCTTGAAGTCGTA 1623122
Query 47852 CTTGTTATTTA---TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTAC 47908
| | || | | |||||| | || | ||| || ||||||| ||| || || || |
Sbjct 1623123 CGTTTTGTCGGACGTCACAAACATGTTCAATGCAATCGATGCTAAATTGCACACGGCAAT 1623182
Query 47909 CTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACC 47968
|||| || | ||| | | ||||||| |||||||||| |||||||| || ||
Sbjct 1623183 TTCATCGGGTGCCGAATACTCGACAATTTCAGTGCATAGATTACTGCATTTGATGGTGCC 1623242
Query 47969 CAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCC 48028
|| |||||| ||||| | ||| |||| ||||||| | ||||| ||||||| ||
Sbjct 1623243 CACATTTTGCTGATTGCTCTTGCGGTTGCATGAGTCCTTGAACAGCATGTAAGGTGTGCC 1623302
Query 48029 AGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCT 48088
||| || | ||| | ||||||||| | ||||| || ||| || || || |
Sbjct 1623303 AGTCTCCACCTGTGCTTCAATGATGGCAAACCAAAGTGTTTGAGCTTTAATTACTCGATT 1623362
Query 48089 AGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATT 48148
||||| || | ||||||| | || | |||||||| || || || | ||||
Sbjct 1623363 CGCTTTGCCCTCTTTCTCGTATTGAACGTACAGTTTCTCAAAATCGTCGCCCCAAACATC 1623422
Query 48149 ATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCT 48208
| | || ||||| | || || ||||||| ||||||||||||| || || |
Sbjct 1623423 TTGGAGGCCGGGACACTTATGTGGGCACATCAGGGACCAATCCTCATTGGCTTCGACGCG 1623482
Query 48209 AGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTC 48268
||||||| | ||| |||||||| | || ||| | || | | | | || ||
Sbjct 1623483 TTTCATAAACAGATCAGGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGCTCCTC 1623542
Query 48269 ATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328
||||| | || | || | || | ||| || | |||||| | |||||| || || ||
Sbjct 1623543 TTTGCCCGTGTTTTTCTTCAAATCCATAAATTCTAATATATCCGAATGCCACGGCTCCAA 1623602
Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATT 48388
||| || || | | |||| ||||| ||| || || ||||| | ||| | || |||
Sbjct 1623603 ATAGATGGCAAATGCACCCGGTCGCTTACCGCCACCCTGATCCACATAGCGTGCCACATT 1623662
Query 48389 GTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448
|| | || | | |||||| || | ||||| || | ||||| || || |||| |
Sbjct 1623663 ATTGAATACACGCAGCATTGGCACCAGCCCATTCGAAGTGCCATTCGTGCCACAAATCGA 1623722
Query 48449 ACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508
| || | || | ||| | || | || || ||||| || ||| || ||
Sbjct 1623723 GGTGCCTTTGGCACGAATACAATGAACGTTCAGCCCGATGCCACCAGCGGCTTTGGAGAT 1623782
Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568
| || || ||| | || | |||| || || || ||| | ||| ||||
Sbjct 1623783 CATGGCGCATTGTTCGACGGATTTGAAAATGCCCTCAATCGAATCGGAGACCATGGTTAA 1623842
Query 48569 TAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGC 48628
|| ||||| |||||||||||| || || | | ||| | |||||| |||||
Sbjct 1623843 AAGGAAACACGACGACATTTGCGGACGATTTGTGGCAGCGGCAAAAAGTGTTGGCGATGC 1623902
Query 48629 ATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCA 48688
||| | || | | || || | || ||||| || || | | ||| ||| |||| ||
Sbjct 1623903 ATGCGTGAAGTACCTTTCAGACAGCAGATTATAGGTCTCCACAGCAGCATCAATAT--CA 1623960
Query 48689 TTG--ATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTG 48746
| | |||||| || || || || ||||| | ||| | || || | || | ||||||
Sbjct 1623961 TCGCCATGTATCCCAATCGAGACGCGCATCAGCATGTGCTGTGGACGCTCTGCTATTTTG 1624020
Query 48747 TTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAA 48806
| |||||| |||| | ||| ||| || | || ||||| |||||||| || || |
Sbjct 1624021 TGATTTATCTTCAGCAAATACGATCGCTCGAGCGTCTTAAATCCAAAATAATTATAGCCA 1624080
Query 48807 AAGTCGTTATCATTAATAATTGATGAATTTA 48837
||||| ||| | || || | |||||||
Sbjct 1624081 AAGTCACGATCGTAGATGATCGCAGAATTTA 1624111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561986260281600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |