Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq17434 208 9e-49 >seq17434 Length=8399593 Score = 208 bits (230), Expect = 9e-49 Identities = 957/1531 (63%), Gaps = 7/1531 (0%) Strand=Plus/Plus Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371 |||| |||| || | || || || || || || || | ||| | || || || || Sbjct 1622583 ATGATGATTCACCACCTGGAACTCACCGGACAGCACGCGTCGGGTGTAGATGTTTGAGGT 1622642 Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431 ||| || || | ||||||||||| || | |||||||| || ||||| || ||||||| Sbjct 1622643 ATACGGCTCAAACGATTCATTATTGCCCATTATTTGAGCCGTAGATGCGGTTGGCATGGG 1622702 Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCA 47491 ||||| | | ||| | || |||| | | ||| ||||| Sbjct 1622703 CGCAACAAGCAGAGAATTGCGCACACCATGCTCCTTGATCGACAGCTTAAGCGAGTTCCA 1622762 Query 47492 ATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTAT 47551 ||||| ||||| | ||| ||| | ||| || || | || || || || | Sbjct 1622763 GTCCCAGAGATCGGTTGGTGTCTTGCCCCACATATCGTACTGTAAGATACCCTTGCTAAC 1622822 Query 47552 CGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTC 47611 ||| || ||| |||| ||| || || | || || | ||| || || ||||| Sbjct 1622823 TGGACTTCCTGGATAGGTTTCATAGGGTCCTTCCTTTTGGGCCAATTCGCAGCTGGCTTC 1622882 Query 47612 CAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGA 47671 || ||| | | |||| || |||||||| |||| | |||| | || ||| Sbjct 1622883 CAGTGCGCCAAAATAGATGGTTTCAAAGATTTGTTGATTTAAAAGTGCGGCCTCTTCGCT 1622942 Query 47672 TTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAAT 47731 ||| |||||| |||| ||| || |||||||| |||||||||||||| Sbjct 1622943 CTCATAAGGATGACGCATTAGAATCAATGCATCCGCGAATCCTTGCACACCAATACCAAT 1623002 Query 47732 TGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTAT 47791 |||| ||| ||| || || || || || | ||||| | ||| || || || Sbjct 1623003 GGGTCGATGGCGAAAATTGGATTTCTTTGCCTCCGGAAGCGGATAGTAGTTGATGTCAAT 1623062 Query 47792 AATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAA 47851 |||||||| | | | |||| | | ||| || || || | Sbjct 1623063 TATTTTATTCAAATTCTTGGTTACTGTTTTGGTGACTTCTTTCAGTTTCTTGAAGTCGTA 1623122 Query 47852 CTTGTTATTTA---TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTAC 47908 | | || | | |||||| | || | ||| || ||||||| ||| || || || | Sbjct 1623123 CGTTTTGTCGGACGTCACAAACATGTTCAATGCAATCGATGCTAAATTGCACACGGCAAT 1623182 Query 47909 CTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACC 47968 |||| || | ||| | | ||||||| |||||||||| |||||||| || || Sbjct 1623183 TTCATCGGGTGCCGAATACTCGACAATTTCAGTGCATAGATTACTGCATTTGATGGTGCC 1623242 Query 47969 CAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCC 48028 || |||||| ||||| | ||| |||| ||||||| | ||||| ||||||| || Sbjct 1623243 CACATTTTGCTGATTGCTCTTGCGGTTGCATGAGTCCTTGAACAGCATGTAAGGTGTGCC 1623302 Query 48029 AGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCT 48088 ||| || | ||| | ||||||||| | ||||| || ||| || || || | Sbjct 1623303 AGTCTCCACCTGTGCTTCAATGATGGCAAACCAAAGTGTTTGAGCTTTAATTACTCGATT 1623362 Query 48089 AGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATT 48148 ||||| || | ||||||| | || | |||||||| || || || | |||| Sbjct 1623363 CGCTTTGCCCTCTTTCTCGTATTGAACGTACAGTTTCTCAAAATCGTCGCCCCAAACATC 1623422 Query 48149 ATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCT 48208 | | || ||||| | || || ||||||| ||||||||||||| || || | Sbjct 1623423 TTGGAGGCCGGGACACTTATGTGGGCACATCAGGGACCAATCCTCATTGGCTTCGACGCG 1623482 Query 48209 AGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTC 48268 ||||||| | ||| |||||||| | || ||| | || | | | | || || Sbjct 1623483 TTTCATAAACAGATCAGGTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGCTCCTC 1623542 Query 48269 ATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328 ||||| | || | || | || | ||| || | |||||| | |||||| || || || Sbjct 1623543 TTTGCCCGTGTTTTTCTTCAAATCCATAAATTCTAATATATCCGAATGCCACGGCTCCAA 1623602 Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATT 48388 ||| || || | | |||| ||||| ||| || || ||||| | ||| | || ||| Sbjct 1623603 ATAGATGGCAAATGCACCCGGTCGCTTACCGCCACCCTGATCCACATAGCGTGCCACATT 1623662 Query 48389 GTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 || | || | | |||||| || | ||||| || | ||||| || || |||| | Sbjct 1623663 ATTGAATACACGCAGCATTGGCACCAGCCCATTCGAAGTGCCATTCGTGCCACAAATCGA 1623722 Query 48449 ACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 | || | || | ||| | || | || || ||||| || ||| || || Sbjct 1623723 GGTGCCTTTGGCACGAATACAATGAACGTTCAGCCCGATGCCACCAGCGGCTTTGGAGAT 1623782 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 | || || ||| | || | |||| || || || ||| | ||| |||| Sbjct 1623783 CATGGCGCATTGTTCGACGGATTTGAAAATGCCCTCAATCGAATCGGAGACCATGGTTAA 1623842 Query 48569 TAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGC 48628 || ||||| |||||||||||| || || | | ||| | |||||| ||||| Sbjct 1623843 AAGGAAACACGACGACATTTGCGGACGATTTGTGGCAGCGGCAAAAAGTGTTGGCGATGC 1623902 Query 48629 ATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCA 48688 ||| | || | | || || | || ||||| || || | | ||| ||| |||| || Sbjct 1623903 ATGCGTGAAGTACCTTTCAGACAGCAGATTATAGGTCTCCACAGCAGCATCAATAT--CA 1623960 Query 48689 TTG--ATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTG 48746 | | |||||| || || || || ||||| | ||| | || || | || | |||||| Sbjct 1623961 TCGCCATGTATCCCAATCGAGACGCGCATCAGCATGTGCTGTGGACGCTCTGCTATTTTG 1624020 Query 48747 TTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAA 48806 | |||||| |||| | ||| ||| || | || ||||| |||||||| || || | Sbjct 1624021 TGATTTATCTTCAGCAAATACGATCGCTCGAGCGTCTTAAATCCAAAATAATTATAGCCA 1624080 Query 48807 AAGTCGTTATCATTAATAATTGATGAATTTA 48837 ||||| ||| | || || | ||||||| Sbjct 1624081 AAGTCACGATCGTAGATGATCGCAGAATTTA 1624111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561986260281600