Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq17440 129 5e-25 seq17434 127 2e-24 seq17439 123 2e-23 seq4835 111 1e-19 seq17436 100 2e-16 seq17438 95.1 1e-14 >seq17440 Length=24565398 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | ||| | ||| || || || || || || || || || || || |||| Sbjct 435535 TTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGG 435594 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| || | ||||| || ||||| ||||| ||||||||||| || | Sbjct 435595 ACAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAG 435654 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| || || || || |||||||| || ||| |||| | |||||| | |||| Sbjct 435655 GAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCA 435714 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||||| || ||||| || || || |||||||| |||||||| Sbjct 435715 CTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 435763 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | ||| | ||| || || || || || || || || || || || |||| Sbjct 435991 TTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGG 436050 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| || | ||||| || ||||| ||||| ||||||||||| || | Sbjct 436051 ACAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAG 436110 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| || || || || |||||||| || ||| |||| | |||||| | |||| Sbjct 436111 GAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCA 436170 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||||| || ||||| || || || |||||||| |||||||| Sbjct 436171 CTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 436219 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | ||| | ||| ||||||||||| || || || || |||||||| |||| Sbjct 434851 TTCCTCCCCTGAGACGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGG 434910 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| || | ||||| || ||||| ||||||||||| || || || | Sbjct 434911 ACAAAGTGCGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAAACGCTGCTGGTCTGGGG 434970 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || || || || ||||| || || || || | || | ||||| || | ||| | Sbjct 434971 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAA 435030 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||| | || || || || | || || ||||| |||||||| Sbjct 435031 CCTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 435079 >seq17434 Length=8399593 Score = 127 bits (140), Expect = 2e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || ||||| || || |||||||| | | ||| | |||| ||||||||||| || Sbjct 1558137 GTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCAATTGCTTGCCA 1558078 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || |||||||| ||||| || ||||| |||||||| || || || || ||| Sbjct 1558077 GCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 1558018 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| |||| | || || |||| ||| || |||||||||| || || || || | ||| Sbjct 1558017 ACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTT 1557958 Query 101453 TTTACAAATATCTGCATGGTTACGC 101477 || || || || ||||| | ||||| Sbjct 1557957 TTAACGAAGATTTGCATCG-TACGC 1557934 >seq17439 Length=18325388 Score = 123 bits (136), Expect = 2e-23 Identities = 194/278 (70%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 13655 AATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCC 13714 || || || || || |||| | | |||||| |||||||| ||| |||| | |||||| Sbjct 5993935 AACTTCCGCTTGCAGCCTTGATAGTTCATGAAGCGTATTTTGCCAAAGATGGCACGCTCC 5993876 Query 13715 ATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGGA 13774 ||||| | |||||||| || | || ||||||||||| || |||| || |||||| Sbjct 5993875 CTCCAGCCCTGATCGTGAAGACCACCAATGGACCACATGCAGCCCACATAGCCATTGGGA 5993816 Query 13775 TCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACTGTA 13834 ||||| ||||||| || || |||||||| | |||| | ||||||| Sbjct 5993815 TCGCGACCATCCAGGCTATACTTGTCGTTCAGCAGTATGCAATACTCCAAAGCCAGCTCC 5993756 Query 13835 GGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGCATT 13894 |||| | ||| || | ||| ||||| |||||||| |||| || | |||| |||||| Sbjct 5993755 GGCGTCGCCGTCCACTCGAGTATCTTTTTGGCCCAATACATTCGCAGAAATCCATGCATT 5993696 Query 13895 TTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCA 13932 ||||| | | | ||||| |||||| | ||||| Sbjct 5993695 TTGCCCTCCTTCACCAGCTGCAGCTGAGCCGAATTCCA 5993658 >seq4835 Length=1216 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 13679 TTCATGTGTCGTATTTTACCATAGATTGGTCGCTCCATCCAGGCACGATCGTGAGTTCCG 13738 |||||| |||||||| ||| |||| | |||||| ||||| | |||||||| || Sbjct 3 TTCATGAAGCGTATTTTGCCAAAGATGGCACGCTCCCTCCAGCCCTGATCGTGAAGACCA 62 Query 13739 CATATTGACCACATGCAACCGGCATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTG 13798 | || ||||||||||| || |||| || |||||||| || ||||||| || || ||| Sbjct 63 CCAATGGACCACATGCAGCCCACATAGCCATTGGGATCACGACCATCCAGGCTATACTTG 122 Query 13799 TCGTTGAAATATATGGCGTTGATTAAAGCCACTGTAGGCGAAATAGACCATTCTAATAtt 13858 ||||| | |||| | ||||||| |||| | ||| || | ||| Sbjct 123 TCGTTCAGCAGTATGCAATACTCCAAAGCCAGCTCCGGCGTCGCCGTCCACTCGAGTATC 182 Query 13859 tttttAGCCCAATATATTCTCATATATCCGTGCATTTTGCC 13899 ||||| |||||||| |||| || | |||| ||||||||||| Sbjct 183 TTTTTGGCCCAATACATTCGCAGAAATCCATGCATTTTGCC 223 >seq17436 Length=11997470 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || || || || ||||||||||| | | ||| | |||| ||| Sbjct 6692604 ACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCTTCC 6692545 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || |||| |||||| ||||| || |||||||| || || || || Sbjct 6692544 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 6692485 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | || || || | ||||| || | |||| || ||| Sbjct 6692484 ATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTG 6692425 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || ||||| || || || ||||||||| Sbjct 6692424 CCAGTCAAAGTCTTGACGAAGATCTGCATG 6692395 >seq17438 Length=17193109 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || || || || || ||||| |||| | || | |||| ||| Sbjct 16961299 ACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 16961358 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| ||||||||||| ||||| || ||||| || || || || ||| Sbjct 16961359 AGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGA 16961418 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| || | ||||| || | |||| || || Sbjct 16961419 ATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCACCTCCAAGGTGATGGTCTTC 16961478 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 ||||| | || || ||||| || ||||| || Sbjct 16961479 CCGGTGAGTGTCTTCACAAAGATTTGCATTGT 16961510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396194171026080