Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq17439 95.1 2e-14 >seq17439 Length=18325388 Score = 95.1 bits (104), Expect = 2e-14 Identities = 171/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 197034 GCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTCGGGATTGTAACA 197093 ||||| || || || || || || |||| || ||| || ||||| | | ||||| Sbjct 11742381 GCTAA--CCAGTTCCAATTTTGCATATGGTTTGGTATTCCTCATTGTCTGTGTCATAACA 11742438 Query 197094 GGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTGAAGCCTCCGAT 197153 ||| || | ||| | |||||| |||| || | ||| || ||| |||| ||||| Sbjct 11742439 GGCTAGCAGGAAGCCACCGTAGATTCCGGTACGTCGTCCTTTGCCCTTGTAGCCACCGAT 11742498 Query 197154 AACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTGAGCCA 197213 ||| ||||||||||||| || | ||| | || |||||||| |||| ||| ||||| Sbjct 11742499 AACAACCAGATCCAGAGAATCACCCACATTTGACAAATAATCTTTTTTCAATTTCAGCCA 11742558 Query 197214 GCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATCATCAA 197273 |||| ||||| || ||||| || || || || | | |||| || || | ||| | Sbjct 11742559 ATTTCTTGATCTTTTTGCAATTTCATATGTGGCCTCCTCATCCAATGTTTTCACCATTAG 11742618 Query 197274 TCCCTCGCA 197282 ||||| || Sbjct 11742619 ACCCTCACA 11742627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676582072947200